WormBase Tree Display for Sequence: F54F7
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F54F7 | DNA | F54F7 | 42663 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (16) | ||||
CDS_child (251) | ||||||
Transcript (16) | ||||||
Pseudogene | F54F7.11 | 14506 | 13785 | |||
Nongenomic | yk365b3 | 28069 | 29655 | |||
PCR_product (26) | ||||||
Allele (595) | ||||||
Oligo_set | Aff_C34E11.3 | 2337 | 3228 | |||
Aff_F54F7.1 | 4599 | 3543 | ||||
Aff_F54F7.2 | 11526 | 12456 | ||||
Aff_F54F7.3 | 17471 | 16807 | ||||
Aff_F54F7.4 | 18963 | 20810 | ||||
Aff_F54F7.5 | 28465 | 29241 | ||||
Aff_F54F7.6 | 33272 | 34083 | ||||
Aff_F54F7.7 | 36043 | 35290 | ||||
Feature_object (176) | ||||||
Feature_data | F54F7:Polysome | 1 | 42663 | |||
F54F7:TranscriptionallyActiveRegion | 1 | 42663 | ||||
F54F7:ChIPSeqTF | 1 | 42663 | ||||
F54F7:TRF | 1 | 42663 | ||||
F54F7:Dust | 1 | 42663 | ||||
F54F7:inverted | 1 | 42663 | ||||
Homol_data (19) | ||||||
Structure | From | Source | CHROMOSOME_X | |||
Overlap_right | Y62H9A | 42560 | ||||
Overlap_left | VF54F7L | |||||
Clone_left_end | F54F7 | 1 | ||||
Clone_right_end | F54F7 | 42663 | ||||
DB_info | Database | EMBL | NDB_AC | Z67755 | ||
NDB_SV | Z67755.2 | |||||
DB_remark | [070521] Sequence correction: deletion -1 bases tatttcaagactttcacttcCcgtgcaagctggtgagcta @ 15698 | |||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | McMurray AA | ||||
From_laboratory | HX | |||||
Date_directory | 070521 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | F54F7 | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | b222bfa8e175663608fbb438dafc0fe7 | ||||
Status | Finished | 28 Apr 1995 00:00:00 | ||||
Submitted | 11 Nov 1995 00:00:00 | |||||
Annotated | 10 Nov 1995 00:00:00 | |||||
Map | Sequence-X | Ends | Left | 6427 | ||
Right | 6450 | |||||
Interpolated_map_position | X | 6.73788 | ||||
Assembly_tags | annotation | 6417 | 6629 | Unique region between inverted repeat elements (6470 to 6630bp). Generally poor quality data and missing d.s. (-) data, but terminators done on all available + reads. | ||
20948 | 21012 | Poor sequence on the -ve strand. Terminated on the +ve strand. | ||||
27648 | 27658 | only 8 T's in the terminator but 9 in the other reads so left as 9. | ||||
37111 | 37111 | A single M13 clone has a C in this position. All other clones (6 +/6-) have a G. Edited accordingly. | ||||
40154 | 40230 | No -ve strand data over bases 40155 - 40231 (76 bp) caused by run of 32 ATs. Terminated on the +ve strand. | ||||
Clone left end | 1 | 4 | left hand end of F54F7 | |||
Clone right end | 42660 | 42663 | right hand end of F54F7 | |||
Method | Genomic_canonical |