WormBase Tree Display for Sequence: F53F1

F53F1 DNA: F53F1 39479
  SMap: S_child: Gene_child (14)
      CDS_child: F53F1.1 16486 14503
        F53F1.1:wp188 16486 14923
        F53F1.1:wp227 16486 14503
        F53F1.1:wp231 16486 14503
        F53F1.2 17396 18524
        F53F1.3 18714 20251
        F53F1.4 21582 22009
        F53F1.5 25572 26408
        F53F1.6a 28076 26697
        F53F1.6b 28076 26697
        F53F1.7 31212 29689
        F53F1.7:wp93 31212 29469
        F53F1.8 33488 31612
        F53F1.8:wp93 33488 31709
        F53F1.8:wp261 33488 31612
        F53F1.9 34380 35738
        F53F1.10 37224 36044
        F53F1.11 39232 38079
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g46n11_x27_V_p 18714 20248
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g89_x27_V_p 25572 26405
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g9n11_x27_V_p 17396 18521
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g27_x27_V_m 18092 18009
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g65_x27_V_p 21582 22006
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g186_x27_V_m 36442 36287
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g139_x27_V_p 19919 20248
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g128_x27_V_p 18989 19364
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g16n11_x27_V_p 17396 18521
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g133_x27_V_p 19238 19940
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g222_x27_V_p 25630 25899
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g16n11_x27_V_p 17396 18521
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g167_x27_V_m 28076 27791
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g100_x27_V_p 21565 22028
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g147_x27_V_p 19949 20158
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g218_x27_V_m 27330 27247
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g126_x27_V_m 26952 26763
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g87_x27_V_m 27351 27022
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g44_x27_V_p 18989 19245
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g37_x27_V_p 19276 20239
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g25_x27_V_p 17824 18521
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g152_x27_V_m 29766 29719
        RNASEQ_embryo_him-8_20dC_post-L1_g4_x27_V_p 25572 26405
        RNASEQ_embryo_him-8_20dC_post-L1_g5_x27_V_p 21582 22006
        RNASEQ_embryo_him-8_20dC_post-L1_g77_x27_V_p 18989 19155
        RNASEQ_embryo_him-8_20dC_post-L1_g74_x27_V_p 19916 20236
        RNASEQ_embryo_him-8_20dC_post-L1_g86_x27_V_p 19174 19424
        RNASEQ_embryo_him-8_20dC_post-L1_g9n11_x27_V_p 17396 18521
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g27_x27_V_m 18092 17797
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g40n11_x27_V_m 28076 26700
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g43_x27_V_p 25572 26405
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g27m3_x27_V_m 18092 18009
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g40n11m4_x27_V_m 27412 27247
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g64m3_x27_V_m 17902 17696
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g16n11_x27_V_p 17396 18521
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g4_x27_V_p 21565 22028
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g71_x27_V_p 18714 20248
        RNASEQ_L4_soma_JK1107_no_DNaseI_g33n11_x27_V_p 18714 20248
        RNASEQ_L4_soma_JK1107_no_DNaseI_g1n11_x27_V_p 25578 26405
        RNASEQ_L4_soma_JK1107_no_DNaseI_g39_x27_V_m 18401 18193
        RNASEQ_L4_soma_JK1107_no_DNaseI_g2_x27_V_p 21582 22006
        RNASEQ_L4_soma_JK1107_no_DNaseI_g66_x27_V_p 21466 22028
        RNASEQ_L4_soma_JK1107_no_DNaseI_g135_x27_V_m 26973 26700
        RNASEQ_L4_soma_JK1107_no_DNaseI_g8n11_x27_V_p 17396 18521
        RNASEQ_L4_soma_JK1107_no_DNaseI_g54n11_x27_V_m 28076 27526
        RNASEQ_L4_soma_JK1107_no_DNaseI_g2m1_x27_V_p 21741 22028
        RNASEQ_L4_soma_JK1107_no_DNaseI_g79_x27_V_m 27396 26980
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g37_x27_V_m 18092 17797
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g36e3k95_x27_V_m 18092 18009
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g72n11_x27_V_m 28076 26977
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g109_x27_V_m 26958 26700
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g21n11_x27_V_p 17396 18521
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g45n11_x27_V_p 18714 20248
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g103_x27_V_p 25572 26405
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g23n11_x27_V_p 20236 20301
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g35_x27_V_p 21582 22006
        RNASEQ_early_embryo_g19_x27_V_p 21565 22028
        RNASEQ_early_embryo_g68n21_x27_V_p 18714 20248
        RNASEQ_early_embryo_g17n11_x27_V_p 17396 18521
        RNASEQ_early_embryo_g9m1_x27_V_p 25821 26405
        RNASEQ_early_embryo_g9_x27_V_p 25572 26405
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g3m1_x27_V_p 25821 26405
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g12_x27_V_m 18092 17797
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g21n11_x27_V_p 17396 18521
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g3_x27_V_p 25572 26405
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g76n21_x27t1_V_p 18714 20248
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g11m1_x27_V_p 21741 22028
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g12m3_x27_V_m 18092 18009
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g11_x27_V_p 21565 22028
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24_x27_V_m 18092 18009
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g67n11_x27_V_m 28076 26700
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g37n11m1_x27t1_V_p 18714 20248
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g23m2_x27_V_m 17902 17696
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g11n11m1_x27_V_p 17824 17926
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g29_x27_V_p 21565 22028
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g11n11_x27_V_p 17396 18521
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g54n11_x27_V_m 28076 26700
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g73_x27t1_V_p 18989 20248
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g5_x27_V_p 21582 22006
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g12_x27_V_p 25572 26405
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g5m1_x27_V_p 21741 22028
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g11m1_x27_V_p 25821 26405
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g26n11_x27_V_p 17396 18521
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g38m1_x27_V_p 25821 26405
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g4n11m1_x27_V_p 17824 17926
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g21_x27_V_p 21582 22006
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g58m3_x27_V_m 27412 27247
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g38_x27_V_p 25572 26405
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g25n11m1_x27_V_p 18714 20248
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g13_x27_V_m 18092 18009
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g25n11_x27_V_p 17396 18521
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g58_x27_V_m 27763 26700
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g13m2_x27_V_m 17902 17696
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g21m1_x27_V_p 21741 22028
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g4m1_x27_V_p 21741 22028
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g17n11_x27t1_V_p 17396 18521
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g139_x27_V_m 27763 27640
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g4_x27_V_p 21582 22006
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g62_x27_V_p 18989 20248
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g28_x27_V_m 18092 18009
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g12m1_x27_V_p 25821 26405
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g12_x27_V_p 25572 26405
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g6n11m5_x27_V_p 18339 18521
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g34_x27_V_m 18092 18009
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g125_x27_V_m 27006 26700
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g39n11_x27_V_p 18714 20248
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g6n11_x27_V_p 17396 18594
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g85_x27_V_m 27763 27058
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g52_x27_V_p 25572 26405
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g66_x27_V_p 21565 22028
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g83n11_x27_V_m 28076 27722
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g45_x27_V_p 21565 22028
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g36_x27_V_m 18092 18009
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g7n11m5_x27_V_p 18339 18521
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g47_x27_V_p 25572 26405
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g7n11_x27_V_p 17396 18594
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g62n11_x27_V_p 18714 20239
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g132_x27_V_m 27327 27085
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g35_x27_V_p 25572 26405
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g168_x27_V_m 27282 27088
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g4n11_x27_V_p 17396 18521
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g89n11_x27_V_m 28076 27295
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g10_x27_V_p 21565 22028
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g183_x27_V_m 26973 26745
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g52n11_x27_V_p 18714 20248
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g85_x27_V_p 25572 26405
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g32_x27_V_m 18092 18009
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g57n11_x27_V_m 28076 27529
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g118_x27_V_m 26958 26700
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g54_x27_V_m 27396 26965
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g40_x27_V_p 21565 22028
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g54m2_x27_V_m 27396 27247
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g5n11_x27_V_p 17396 18521
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g37n11_x27_V_p 18714 20239
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g9n11m1_x27_V_p 17824 17926
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g22_x27_V_p 21565 22028
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g36n11_x27_V_p 17396 18521
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g36n11m1_x27_V_p 18714 20248
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g60_x27_V_p 25572 26405
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g49n11_x27_V_m 28076 26733
        F53F1.gc1 16486 14862
        F53F1.gc2 17396 18524
        F53F1.gc3 18714 20251
        F53F1.gc4 21582 22009
        F53F1.gc5 25572 26408
        F53F1.gc6 28076 26704
        F53F1.gc7 31212 29689
        F53F1.gc8 33488 31908
        F53F1.gc9 34380 35738
        F53F1.gc10 39143 38079
        ContigV.elegans.jigsaw.3310.mRNA3310 18680 20624
        ContigV.elegans.jigsaw.3316.mRNA3316 34131 35880
        ContigV.elegans.jigsaw.3315.mRNA3315 33540 31587
        ContigV.elegans.jigsaw.3311.mRNA3311 21550 22184
        ContigV.elegans.jigsaw.3312.mRNA3312 25536 26536
        ContigV.elegans.jigsaw.3309.mRNA3309 17320 18621
        ContigV.elegans.jigsaw.3314.mRNA3314 31212 29668
        ContigV.elegans.jigsaw.3318.mRNA3318 39310 37846
        ContigV.elegans.jigsaw.3308.mRNA3308 16549 14432
        ContigV.elegans.jigsaw.3317.mRNA3317 37320 34437
        ContigV.elegans.jigsaw.3313.mRNA3313 28109 26570
        AG1201_F53F1.1.T1 16486 14503
        AG1201_F53F1.1.T2 16486 14503
        AG1201_F53F1.2.T1 17396 18524
        AG1201_RIT5M.896.T3 18092 17794
        AG1201_RIT5M.896.T2 18092 18006
        AG1201_RIT5M.896.T1 18401 18178
        AG1201_RIT5M.1619.T1 18923 18621
        AG1201_RIT5M.1619.T2 18923 18711
        AG1201_F53F1.3.T2 18714 20251
        AG1201_F53F1.3.T1 19919 20251
        AG1201_F53F1.4.T8 21402 21515
        AG1201_F53F1.4.T9 21402 22009
        AG1201_F53F1.4.T7 21582 21913
        AG1201_F53F1.4.T5 21582 22009
        AG1201_F53F1.4.T4 21583 22031
        AG1201_F53F1.4.T3 21782 21913
        AG1201_F53F1.4.T1 21783 22031
        AG1201_F53F1.5.T3 25572 26408
        AG1201_F53F1.5.T2 25578 26408
        AG1201_RIT5M.3464.T1 26324 25806
        AG1201_F53F1.5.T1 25851 26408
        AG1201_F53F1.6.T1 28076 26697
        AG1201_F53F1.6.T6 28076 26697
        AG1201_F53F1.6.T7 28076 26697
        AG1201_F53F1.6.T3 28076 27229
        AG1201_F53F1.6.T2 28076 27238
        AG1201_F53F1.7.T1 31212 29689
        AG1201_F53F1.7.T3 31212 29689
        AG1201_F53F1.7.T2 31212 30008
        AG1201_F53F1.8.T2 31933 31742
        AG1201_F53F1.8.T1 32731 31745
        AG1201_F53F1.8.T3 33488 31745
        AG1201_F53F1.9.T1 34628 35738
        AG1201_F53F1.10.T1 37224 36044
        AG1201_F53F1.10.T2 37224 36044
        AG1201_F53F1.11.T1 39232 38079
      Transcript (15)
      Genomic_non_canonical: WRM0632dH04 3499 36423
        WRM0639bD06 1911 34909
      PCR_product (39)
      Allele (553)
      Oligo_set (11)
      Feature_object (459)
      Feature_data: F53F1:Polysome 1 39479
        F53F1:TranscriptionallyActiveRegion 1 39479
        F53F1:ChIPSeqTF 1 39479
        F53F1:TRF 1 39479
        F53F1:Dust 1 39479
        F53F1:inverted 1 39479
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: Y2H9A 39380
    Overlap_left: M04G12
    Clone_left_end: F53F1 1
    Clone_right_end: M04G12 21759
      F53F1 39479
  DB_info: Database: EMBL NDB_AC Z81088
        NDB_SV Z81088.2
    DB_remark: [121025] Sequence correction WBsf268032 : Insertion A1 bases from @ 29079
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Burton J
    From_laboratory: HX
    Date_directory: 960829
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F53F1
  Properties: Genomic_canonical
    Checksum: MD5: 6a73153a1edcb19d9cf3ed2a9e9098e9
    Status: Finished: 29 Aug 1996 00:00:00
      Submitted: 21 Oct 1996 00:00:00
      Annotated: 13 Mar 1997 00:00:00
  Map: Sequence-V Ends: Left: 7619
        Right: 7652
  Interpolated_map_position: V 5.25932
  Assembly_tags: Clone left end 1 4 F53F1
    Clone right end 21759 21756 Right hand end of M04G12.
      39476 39479 F53F1
    Finished Left 1 1
    Finished Right 39479 39479
  Method: Genomic_canonical