WormBase Tree Display for CDS: F53A2.6b
expand all nodes | collapse all nodes | view schema
| F53A2.6b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F53A2 | |||
| Structure | Source_exons | 1 | 464 | |||
| 511 | 685 | |||||
| DB_info | Database | SwissProt | UniProtAcc | O45551 | ||
| UniProt | UniProtAcc | O45551 | ||||
| UniProt_GCRP | UniProtAcc | O45551 | ||||
| AlphaFold | entry | O45551 | ||||
| NCBI_protein | GI_number | GI:22859090 | ||||
| Protein_id | CHROMOSOME_III | CAB04454 | 2 | |||
| DB_remark | IFE-1 protein; contains similarity to Pfam domain PF01652 (Eukaryotic initiation factor 4E); contains similarity to Interpro domains IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Feature_evidence | WBsf017303 | ||||
| Visible | Gene | WBGene00002059 | ||||
| Corresponding_transcript | F53A2.6b.1 | |||||
| Corresponding_protein | CE31809 | |||||
| Corresponding_PCR_product | TH:320B8 | |||||
| cenix:320-b8 | ||||||
| mv_F53A2.6 | ||||||
| sjj_F53A2.6 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (21) | ||||||
| RNAi_result (15) | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | Eukaryotic translation initiation factor 4E-1 | Accession_evidence | UniProt | SP:O45551 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 17 Nov 2009 00:00:00 | WBPerson1983 | ||||
| Remark | Annotation based on homology to SwissProt Q21693 (BLASTP score 779) | |||||
| [020902 ar2] Changed start codon and made exon 1 UTR. This accomodates the confirmed intron and the resulting protein is more similar to other species EIF-4E proteins. | Curator_confirmed | WBPerson1847 | ||||
| Associated_feature | WBsf017303 | |||||
| Method | curated |
