WormBase Tree Display for Sequence: F41G3

F41G3 DNA: F41G3 35187
  SMap: S_child: Gene_child (14)
      CDS_child: F41G3.1 25209 25867
        F41G3.2:wp228 19407 20673
        F41G3.2:wp234 19407 20540
        F41G3.2:wp277 19407 20428
        F41G3.3:wp261 16592 19037
        F41G3.3a 16706 19037
        F41G3.3b 16706 20428
        F41G3.4 15298 16001
        F41G3.5 6875 8702
        F41G3.5:wp205 7721 8702
        F41G3.6 3036 4209
        F41G3.10 9631 8808
        F41G3.10:wp86 12603 8808
        F41G3.11 14887 13242
        F41G3.11:wp120 14528 13242
        F41G3.12 35080 20960
        F41G3.12:wp87 35080 20960
        F41G3.12:wp159 35080 31447
        F41G3.12:wp183 35080 20960
        F41G3.12:wp188 35080 20963
        F41G3.13:wp15 23901 20963
        F41G3.14 1852 2878
        F41G3.15:wp92 30834 20960
        F41G3.15:wp147 30834 20960
        F41G3.15:wp159 31324 20960
        F41G3.16 5927 5597
        F41G3.17 4846 4455
        F41G3.17:wp121 4846 4456
        F41G3.18 28447 28896
        F41G3.19 12243 11838
        F41G3.19:wp237 12327 11838
        F41G3.20 11128 9982
        F41G3.20:wp228 11128 9982
        F41G3.20:wp234 10797 9982
        F41G3.21 13029 12567
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g10n11_x14_II_p 3036 4206
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g196_x14_II_m 22273 21896
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g24n11_x14_II_m 9543 8811
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g68n11_x14_II_p 924 4337
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g145_x14_II_m 17967 17870
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g111_x14_II_m 14887 14678
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g58n11_x14_II_p 3036 4206
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g147_x14_II_p 3594 4337
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g64n11_x14_II_p 385 6160
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g156_x14_II_m 5927 5606
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g72_x14_II_p 6132 7182
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g133_x14_II_m 22293 21606
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g51n11_x14_II_m 12279 7084
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g51n11s7k199_x14_II_m 9469 6496
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g43n11_x14_II_p 385 6160
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g213_x14_II_m 4762 4653
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g10n11_x14_II_m 9543 8811
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g45_x14_II_p 1573 3147
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g112_x14_II_m 24841 24579
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g58_x14_II_m 23528 22608
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g126_x14_II_m 17563 17459
        RNASEQ_embryo_him-8_20dC_post-L1_g33n11_x14_II_p 3036 4206
        RNASEQ_embryo_him-8_20dC_post-L1_g143_x14_II_p 3594 4334
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g5n12_x14_II_p 25196 25272
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g217_x14_II_m 21847 21197
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g198_x14_II_m 5927 5609
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g122n11_x14_II_p 1852 2875
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g5n11_x14_II_p 25172 25968
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g15_x14_II_p 15298 15998
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g42_x14_II_p 6875 8699
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g8n11_x14_II_m 9543 8811
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g170_x14_II_m 23901 21875
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g63n11_x14_II_p 3036 4206
        RNASEQ_L4_soma_JK1107_no_DNaseI_g339_x14_II_p 382 523
        RNASEQ_L4_soma_JK1107_no_DNaseI_g15n11_x14_II_p 25196 25968
        RNASEQ_L4_soma_JK1107_no_DNaseI_g249_x14_II_p 6997 7053
        RNASEQ_L4_soma_JK1107_no_DNaseI_g202_x14_II_p 20106 20156
        RNASEQ_L4_soma_JK1107_no_DNaseI_g278_x14_II_p 34 258
        RNASEQ_L4_soma_JK1107_no_DNaseI_g39n11_x14_II_m 9543 8934
        RNASEQ_L4_soma_JK1107_no_DNaseI_g137_x14_II_p 866 1503
        RNASEQ_L4_soma_JK1107_no_DNaseI_g81_x14_II_p 924 4334
        RNASEQ_L4_soma_JK1107_no_DNaseI_g116_x14_II_m 18078 17843
        RNASEQ_L4_soma_JK1107_no_DNaseI_g200_x14_II_m 22293 22066
        RNASEQ_L4_soma_JK1107_no_DNaseI_g212_x14_II_m 21904 21786
        RNASEQ_L4_soma_JK1107_no_DNaseI_g69n11_x14_II_p 385 6160
        RNASEQ_L4_soma_JK1107_no_DNaseI_g69n11e10k78_x14_II_p 4052 4110
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g191_x14_II_p 6807 6912
        RNASEQ_early_embryo_g76_x14_II_p 1852 2875
        RNASEQ_early_embryo_g144_x14_II_m 9103 8814
        RNASEQ_early_embryo_g138e4k177_x14_II_p 1683 2542
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g98n11_x14_II_p 3036 4206
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g128_x14_II_p 20097 20537
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g36n11_x14_II_m 23901 20963
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g41_x14_II_m 28009 23799
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g97_x14_II_m 13029 12570
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g99_x14_II_p 16706 19022
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g103n11_x14_II_m 9543 8811
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g114n11e4k128_x14_II_p 1683 2491
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g78_x14_II_m 13029 12570
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g155_x14_II_m 5927 5603
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g30n11_x14_II_p 1852 2875
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g10n12_x14_II_p 25196 25272
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g6n11_x14_II_m 9543 8811
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g10n11_x14_II_p 25172 25968
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g68_x14_II_p 6132 7185
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g134_x14_II_p 19557 20084
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g48n11_x14_II_p 3036 4206
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g9n11_x14_II_m 9543 8811
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g66n11_x14_II_p 1852 2875
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g8n12_x14_II_p 25196 25272
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g232_x14_II_p 19930 20073
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g40n11_x14_II_p 3036 4206
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g184_x14_II_m 9103 8811
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g42_x14_II_p 6831 6973
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g54n11_x14_II_m 9543 9241
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g86_x14t1_II_p 2547 2875
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g188_x14_II_p 18471 19034
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g156_x14_II_m 12888 12603
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g41_x14_II_p 6132 7182
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g65_x14_II_m 10852 6496
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g238_x14_II_m 23341 23135
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g203_x14_II_m 22146 21720
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g61n11e10k235_x14_II_p 4052 4110
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g143_x14_II_m 23901 23842
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g164_x14_II_p 7012 7720
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g200_x14_II_m 5927 5663
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g14n11_x14_II_p 3036 4206
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g44n11_x14_II_p 1852 2872
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g115_x14_II_p 6132 7179
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g109_x14_II_m 7616 6496
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g65n11_x14_II_p 385 6160
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g223_x14_II_m 17599 17447
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g30n11e5k62_x14_II_m 10412 10233
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g30n11_x14_II_m 12279 8060
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g110n11_x14_II_m 18078 17843
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g95_x14_II_p 6729 7167
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g38n11_x14_II_p 25196 25932
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g178_x14_II_m 12888 12633
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g52n11_x14_II_p 1683 3010
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g253_x14_II_m 21814 21047
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g163_x14_II_m 22330 21872
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g154_x14_II_p 5336 5435
        F41G3.gc1 34 1512
        F41G3.gc2 1852 4209
        F41G3.gc3 4846 4455
        F41G3.gc4 7721 8702
        F41G3.gc5 12243 8808
        F41G3.gc6 14887 13242
        F41G3.gc7 15298 16001
        F41G3.gc8 16706 19037
        F41G3.gc9 19407 20540
        F41G3.gc10 35080 20960
        ContigII.elegans.jigsaw.1791.mRNA1791 29791 20801
        ContigII.elegans.jigsaw.1780.mRNA1780 4897 4440
        ContigII.elegans.jigsaw.1782.mRNA1782 7721 8736
        ContigII.elegans.jigsaw.1781.mRNA1781 7920 5551
        ContigII.elegans.jigsaw.1788.mRNA1788 15249 16112
        ContigII.elegans.jigsaw.1783.mRNA1783 9647 8735
        ContigII.elegans.jigsaw.1784.mRNA1784 11318 9907
        ContigII.elegans.jigsaw.1789.mRNA1789 16700 19180
        ContigII.elegans.jigsaw.1779.mRNA1779 2998 4389
        ContigII.elegans.jigsaw.1785.mRNA1785 12332 11531
        ContigII.elegans.jigsaw.1790.mRNA1790 19378 20734
        ContigII.elegans.jigsaw.1787.mRNA1787 14894 13160
        ContigII.elegans.jigsaw.1778.mRNA1778 1788 2936
        ContigII.elegans.jigsaw.1786.mRNA1786 13058 12468
        AG1201_F41G3.14.T1 1852 2878
        AG1201_F41G3.14.T3 1852 2878
        AG1201_F41G3.6.T3 3036 3186
        AG1201_F41G3.6.T2 3036 4209
        AG1201_F41G3.6.T4 3036 4209
        AG1201_F41G3.6.T1 3142 4209
        AG1201_F41G3.17.T1 4846 4554
        AG1201_F41G3.16.T1 5647 5597
        AG1201_F41G3.16.T2 5927 5597
        AG1201_F41G3.5.T1 6875 8702
        AG1201_F41G3.5.T2 6875 8702
        AG1201_F41G3.5.T3 6875 8702
        AG1201_F41G3.10.T3 9631 8808
        AG1201_F41G3.10.T1 9631 9394
        AG1201_F41G3.20.T1 10797 9982
        AG1201_F41G3.19.T1 12327 11838
        AG1201_F41G3.21.T1 13029 12567
        AG1201_F41G3.11.T1 14887 13242
        AG1201_F41G3.4.T1 15298 16001
        AG1201_F41G3.4.T2 15298 16001
        AG1201_F41G3.3.T1 16592 19013
        AG1201_F41G3.3.T3 16592 19013
        AG1201_F41G3.3.T2 16592 19037
        AG1201_F41G3.2.T1 19407 20540
        AG1201_F41G3.12.T11 23901 20960
        AG1201_F41G3.12.T12 28009 20960
        AG1201_F41G3.12.T8 32674 20960
        AG1201_F41G3.12.T9 32674 20960
        AG1201_F41G3.12.T10 35080 20960
        AG1201_F41G3.1.T4 25100 25947
        AG1201_F41G3.1.T3 25100 25971
        AG1201_F41G3.1.T2 25172 25971
        AG1201_F41G3.1.T1 25196 25971
      Transcript (17)
      Nongenomic: yk379g10 2525 2874
      PCR_product (26)
      Allele (443)
      Oligo_set: Aff_F41G3.1 25206 25864
        Aff_F41G3.10 10247 8806
        Aff_F41G3.11 14424 13240
        Aff_F41G3.12 22515 20958
        Aff_F41G3.2 19817 20671
        Aff_F41G3.3 18386 19036
        Aff_F41G3.4 15296 16000
        Aff_F41G3.5 7960 8700
        Aff_F41G3.6 3416 4208
      Feature_object (219)
      Feature_data: F41G3:Polysome 1 35187
        F41G3:TranscriptionallyActiveRegion 1 35187
        F41G3:ChIPSeqTF 1 35187
        F41G3:TRF 1 35187
        F41G3:Dust 1 35187
        F41G3:inverted 1 35187
      Homol_data (19)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: T13C2 27085
    Overlap_left: T14B4
    Clone_left_end: F41G3 1
      T13C2 30284
    Clone_right_end: T14B4 2709
      F41G3 34359
  DB_info: Database: EMBL NDB_AC FO081361
        NDB_ID _U39999
        NDB_SV FO081361.2
    Secondary_accession: U39999
    DB_remark (12)
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Menezes S
    From_laboratory: RW
    Date: 13 Jul 1999 00:00:00
      22 Jun 1994 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: F41G3
    Remark: added a T at position 4748. [tb 20040317]
      [20080227 tbieri] added 1 bp (G) at position 28352 (between GTCAACTCGT and CTTTGCCAAC)
      [20080227 tbieri] added 1 bp (T) at position 29776 (between CAATTTGATG and TTGCATGCAA)
      [20080227 tbieri] added 1 bp (G) at position 30031 (between TAAACAGCTG and CGACACGCAA)
      [20080228 tbieri] added 1 bp (C) at position 411 (between TAATCGCTCG and GTGGCACCGA)
      [20100427 wnash] deleted -1 bp at position 9393 (between GGTGGTTGTG and GGACAGCAGC)
  Properties: Genomic_canonical
    Checksum: MD5: 0c773e90ce48166b65efe695915b3c4f
    Status: Finished
      Submitted: 13 Jul 1999 00:00:00
  Map: Sequence-II
  Interpolated_map_position: II 0.0846645
  Method: Genomic_canonical