WormBase Tree Display for Sequence: F40H3

F40H3 DNA: F40H3 24810
  SMap: S_child: Gene_child (15)
      CDS_child: F40H3.1:wp155 12251 16644
        F40H3.1a 12251 16644
        F40H3.1b 15389 16644
        F40H3.2 5971 6718
        F40H3.2:wp107 5971 6770
        F40H3.3 3838 5167
        F40H3.4 23670 22008
        F40H3.4a:wp274 23670 22008
        F40H3.5:wp228 1527 85
        F40H3.6:wp276 19419 19306
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_gF40H3.6 19419 19309
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g69n11_x13_II_m 23670 23070
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g214_x13_II_p 15389 16641
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g61n11_x13_II_m 20226 19966
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g95_x13_II_m 19651 19520
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g113_x13_II_m 22877 22735
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g150_x13_II_m 22253 22119
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g201_x13_II_m 23020 22928
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g23n11_x13_II_m 4832 4005
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g68n11e2k64_x13_II_m 20226 19966
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g139_x13_II_m 19419 19360
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g119s1k118_x13_II_p 15344 15523
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g112_x13_II_m 22439 22011
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g68n11s2k87_x13_II_m 19419 19309
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g30n11_x13_II_m 23670 22455
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g113_x13_II_m 810 472
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g91n11_x13_II_p 5971 6706
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g10n11_x13_II_p 15389 16641
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g69n11_x13_II_m 20129 19515
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g71n11_x13_II_p 5971 6715
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g155_x13_II_m 810 653
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g176_x13_II_m 20226 19990
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g135_x13_II_m 22292 22020
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g170_x13_II_m 22529 22296
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g196_x13_II_p 15389 16641
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g106_x13_II_m 22652 22578
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g111_x13_II_m 810 659
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_gF40H3.6 19419 19309
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g75_x13_II_m 22475 22041
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g16n11_x13_II_p 15389 16641
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g37n11_x13_II_m 23670 22581
        RNASEQ_embryo_him-8_20dC_post-L1_g91_x13_II_p 16210 16641
        RNASEQ_embryo_him-8_20dC_post-L1_g205_x13_II_p 4092 4813
        RNASEQ_embryo_him-8_20dC_post-L1_g105_x13_II_p 5084 5164
        RNASEQ_embryo_him-8_20dC_post-L1_g29n11s2k106_x13_II_m 19419 19309
        RNASEQ_embryo_him-8_20dC_post-L1_g44n11_x13_II_m 20226 20175
        RNASEQ_embryo_him-8_20dC_post-L1_g29n11e2k226_x13_II_m 20129 19966
        RNASEQ_embryo_him-8_20dC_post-L1_g35n11_x13_II_m 23670 22011
        RNASEQ_embryo_him-8_20dC_post-L1_g96_x13_II_p 15688 16206
        RNASEQ_embryo_him-8_20dC_post-L1_g29n11_x13_II_m 20209 19515
        RNASEQ_embryo_him-8_20dC_post-L1_g108_x13_II_m 810 665
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g124_x13_II_m 10187 9925
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g228_x13_II_m 667 596
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g147_x13_II_m 22484 22011
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g164_x13_II_m 20226 20089
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g200_x13_II_m 19454 19383
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g70n11_x13_II_m 23670 22581
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g218_x13_II_m 963 835
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g183_x13_II_p 4029 4804
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g66n11_x13_II_p 5971 6715
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g188_x13_II_p 15389 16641
        RNASEQ_L4_soma_JK1107_no_DNaseI_g55n11_x13_II_m 23670 23058
        RNASEQ_L4_soma_JK1107_no_DNaseI_g135_x13_II_m 810 710
        RNASEQ_L4_soma_JK1107_no_DNaseI_g48n11_x13_II_p 5971 6694
        RNASEQ_L4_soma_JK1107_no_DNaseI_g39n11_x13_II_p 15389 16641
        RNASEQ_L4_soma_JK1107_no_DNaseI_g82_x13_II_p 3838 5164
        RNASEQ_L4_soma_JK1107_no_DNaseI_g144_x13_II_m 22316 22269
        RNASEQ_L4_soma_JK1107_no_DNaseI_g187_x13_II_m 23006 22741
        RNASEQ_L4_soma_JK1107_no_DNaseI_g199_x13_II_m 399 245
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g21n11_x13_II_m 23670 22011
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g17n11_x13_II_p 5971 6715
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g154_x13_II_p 4083 4885
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g196_x13_II_p 15389 16641
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g96_x13_II_m 19651 19520
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g62n11m4_x13_II_m 546 328
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g91n11_x13_II_m 20226 20077
        RNASEQ_early_embryo_g49n11_x13_II_m 20226 20175
        RNASEQ_early_embryo_g24n11_x13_II_m 20209 19966
        RNASEQ_early_embryo_g59_x13_II_m 19419 19309
        RNASEQ_early_embryo_g187_x13_II_p 15389 16641
        RNASEQ_early_embryo_g96_x13_II_p 3838 5164
        RNASEQ_early_embryo_g55n11_x13_II_m 23670 22011
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g68n11_x13_II_m 20226 20175
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g78_x13_II_p 3838 5164
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g205_x13_II_p 15389 16641
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g29n11_x13_II_m 23670 22011
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g76_x13_II_m 19419 19309
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g128_x13_II_p 6259 6681
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g36n11_x13_II_m 20209 19966
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24n11_x13_II_p 15389 15523
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g40n11_x13_II_p 5971 6715
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g80n11_x13_II_m 23670 22581
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g73n11_x13_II_m 22652 22011
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g60_x13_II_m 810 328
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g137_x13_II_p 5084 5164
        RNASEQ_mid-L1_20dC_4hrs_post-L1_gF40H3.6 19419 19309
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g110_x13_II_p 12251 16641
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g23n11_x13_II_p 18575 22359
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g68n11_x13_II_m 23670 22011
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g164_x13_II_p 3838 3951
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g130_x13_II_p 3996 4885
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g55n11_x13_II_p 5971 6715
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g66n11m4_x13_II_m 1527 262
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g39n11_x13_II_p 15389 16641
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g20n11_x13_II_m 4832 4005
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g210_x13_II_m 22505 22416
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g36n11_x13_II_p 15389 15523
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g41n11_x13_II_p 5971 6715
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g144_x13_II_m 23117 22729
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g113_x13_II_m 810 331
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g248_x13_II_m 22307 22218
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g158_x13_II_p 12251 16641
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g189_x13_II_m 7900 7798
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g14n11m4_x13_II_m 2976 2725
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g14n11_x13_II_m 3732 2311
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g69_x13_II_m 23682 23052
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g114_x13_II_p 5084 5164
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g207_x13_II_p 15389 16641
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g162_x13_II_m 22433 22218
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g199_x13_II_m 22652 22500
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g176_x13_II_p 6171 6291
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g184_x13_II_m 646 517
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g134_x13_II_m 810 665
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g202_x13_II_m 23568 23136
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g274_x13_II_m 7903 7798
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g159_x13_II_m 22739 22628
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g144_x13_II_m 22316 22242
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g53n11_x13_II_p 15389 16641
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g52n11_x13_II_m 20209 19966
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g143_x13_II_m 23569 23143
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g87_x13_II_m 19651 19520
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g257_x13_II_p 3910 4067
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g70n11_x13_II_m 20226 20175
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g168_x13_II_m 22904 22795
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g153_x13_II_p 6184 6298
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g196_x13_II_m 545 489
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g47n11_x13_II_p 15389 16641
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g78_x13_II_m 19651 19520
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g69n11_x13_II_m 23670 23109
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g52n11_x13_II_m 20226 19966
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g97_x13_II_m 22739 22628
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g225_x13_II_p 6327 6695
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g45n11_x13_II_p 15389 16641
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g160_x13_II_m 20033 19914
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_gF40H3.6 19419 19309
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g138_x13_II_m 22901 22753
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g146_x13_II_m 1476 835
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g186_x13_II_m 22418 22269
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g177_x13_II_m 23555 23102
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g57n11_x13_II_p 5971 6715
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g163_x13_II_m 22310 22053
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g180_x13_II_m 810 680
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g155_x13_II_m 22603 22553
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g61n11_x13_II_p 5971 6304
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g136_x13_II_m 22925 22744
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g42n11_x13_II_p 15389 16641
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g237_x13_II_p 6327 6713
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g188_x13_II_p 3883 4076
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g55n11_x13_II_m 20226 19966
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g90_x13_II_m 19651 19520
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g66n11_x13_II_m 23670 23100
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g153_x13_II_m 22619 22434
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_gF40H3.6 19419 19309
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g178_x13_II_m 794 667
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g155_x13_II_m 375 200
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g175_x13_II_p 4068 4804
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g35n11_x13_II_p 5971 6715
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g45n11_x13_II_p 15389 16641
        F40H3.gc1 1527 128
        F40H3.gc2 3838 5167
        F40H3.gc3 5971 6718
        F40H3.gc4 12251 13797
        F40H3.gc5 15389 16644
        F40H3.gc6 20226 19329
        F40H3.gc7 23687 22008
        ContigII.elegans.jigsaw.1636.mRNA1636 12127 16982
        ContigII.elegans.jigsaw.1635.mRNA1635 5847 6863
        ContigII.elegans.jigsaw.1637.mRNA1637 20286 19257
        ContigII.elegans.jigsaw.1638.mRNA1638 23916 21870
        ContigII.elegans.jigsaw.1634.mRNA1634 3737 5472
        AG1201_F40H3.5.T1 1527 85
        AG1201_RIT2M.75.T1 2433 2317
        AG1201_F40H3.3.T3 3895 4885
        AG1201_F40H3.3.T1 5084 5167
        AG1201_F40H3.2.T1 5971 6718
        AG1201_F40H3.1.T4 12251 16644
        AG1201_F40H3.1.T1 15389 16644
        AG1201_F40H3.4.T6 19419 19306
        AG1201_F40H3.4.T10 20209 19512
        AG1201_F40H3.4.T9 23168 20220
        AG1201_F40H3.4.T8 23174 20220
        AG1201_RIT2P.1410.T1 21539 21652
        AG1201_F40H3.4.T1 23670 22008
        AG1201_F40H3.4.T3 23670 22008
        AG1201_F40H3.4.T4 23670 22008
      Transcript (16)
      Nongenomic: [cgc5730]:f40h3.4
      PCR_product (21)
      Allele (316)
      Oligo_set: Aff_F40H3.1 15628 16644
        Aff_F40H3.2 5971 6770
        Aff_F40H3.3 3838 5134
        Aff_F40H3.4 22901 22008
      Feature_object (217)
      Feature_data: F40H3:Polysome 1 24810
        F40H3:TranscriptionallyActiveRegion 1 24810
        F40H3:ChIPSeqTF 1 24810
        F40H3:TRF 1 24810
        F40H3:Dust 1 24810
        F40H3:inverted 1 24810
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: C30B5 23561
    Overlap_left: H35N03
    Clone_left_end: C30B5 23561
      F40H3 1
    Clone_right_end: H35N03 11603
  DB_info: Database: EMBL NDB_AC FO080721
        NDB_ID _AF098987
        NDB_SV FO080721.1
    Secondary_accession: AF098987
    DB_remark: The 5' clone is H35N03, 1550 bp overlap; the 3' clone is C30B5, 1250 bp overlap. Actual start of this clone is at base position 1 of F40H3; actual end is at 9292 of C30B5.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Gattung S
    From_laboratory: RW
    Date: 05 Mar 1998 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: F40H3
  Properties: Genomic_canonical
    Checksum: MD5: dfb1104756fa0baeb16d52e4a94e4b9d
    Status: Finished
      Submitted: 05 Mar 1998 00:00:00
  Map: Sequence-II
  Interpolated_map_position: II -0.412375
  Method: Genomic_canonical