WormBase Tree Display for CDS: F40A3.7
expand all nodes | collapse all nodes | view schema
| F40A3.7 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F40A3 | |||
| Structure | Source_exons | 1 | 83 | |||
| 136 | 355 | |||||
| 817 | 938 | |||||
| 991 | 1134 | |||||
| 2143 | 2337 | |||||
| 2394 | 2555 | |||||
| 2726 | 2838 | |||||
| 4042 | 4232 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O16268 | ||
| UniProt | UniProtAcc | O16268 | ||||
| UniProt_GCRP | UniProtAcc | O16268 | ||||
| AlphaFold | entry | O16268 | ||||
| NCBI_protein | GI_number | GI:351059110 | ||||
| TREEFAM | TREEFAM_ID | TF315359 | ||||
| Protein_id | CHROMOSOME_V | CCD66962 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF10324 (Serpentine type 7TM GPCR chemoreceptor Srw); contains similarity to Interpro domains IPR019427 (7TM GPCR, serpentine receptor class w (Srw)), IPR000276 (G protein-coupled receptor, rhodopsin-like) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00018222 | ||||
| Corresponding_transcript | F40A3.7.1 | |||||
| Corresponding_protein | CE10154 | |||||
| Corresponding_PCR_product | cenix:117-a12 | |||||
| mv_F40A3.7 | ||||||
| sjj_F40A3.7 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_160107 | |||||
| elegans_PE_SS_GG1500|c1_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_86427 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR182C5_2 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF182C5_1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR182C5_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00014620 | |||||
| WBRNAi00046813 | ||||||
| WBRNAi00032007 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | G-protein coupled receptors family 1 profile domain-containing protein | Accession_evidence | UniProt | TR:O16268 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
