WormBase Tree Display for Sequence: F36D3
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| F36D3 | DNA | F36D3 | 38990 | ||
|---|---|---|---|---|---|
| SMap | S_child (12) | ||||
| Structure | From | Source | CHROMOSOME_V | ||
| Overlap_right | Y32B12B | 38881 | |||
| Overlap_left | Y32B12A | ||||
| DB_info | Database | EMBL | NDB_AC | Z81531 | |
| NDB_SV | Z81531.1 | ||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | McMurray AA | |||
| From_laboratory | HX | ||||
| Date_directory | 970721 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | F36D3 | |||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 5c6ceadeaa982370f1b7e76193142a5c | |||
| Status | Finished | 21 Jul 1997 00:00:00 | |||
| Submitted | 06 Nov 1996 00:00:00 | ||||
| Annotated | 01 Jan 1980 00:00:00 | ||||
| Map | Sequence-V | Ends | Left | 9431 | |
| Right | 9457 | ||||
| Interpolated_map_position | V | 10.2169 | |||
| Assembly_tags | Finished Left | 1 | 4 | ||
| Clone left end | 1 | 4 | F36D3 (but no anchoring overlap data to confirm whether this is the left or right end) | ||
| annotation | 8047 | 8052 | read 204 has 18 copies of the AT repeat but all other reads have 21 copies. Edited to 21 copies. | ||
| 27819 | 28242 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 28243 | 28477 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 28478 | 28892 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 28893 | 29313 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 29314 | 29512 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 29513 | 29922 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600.Bases 29513 - 29737 are covered by a single clone and poorquality data. | |||
| 29923 | 30462 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 30463 | 30859 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| 30860 | 31045 | tandem repeat over bases 27800 - 31030.Typical repeat element is TGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTAATTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTGTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACGAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTTTTTTTATTTCAAAAAACTTTTCAGCATAGTCAAAAGTAGCAGAAAATACCAAACAAAGTATGCTAGCTTGTACGGAAGTTTATTTTAAAAAATTCAGAAATTAACCAGAAGCTGCTATTTTCAAAAATTCAAAAGTATGGGAAAATCATATGAAGTCATTCT (a 160mer).Restriction digest indicates that there is one repeat elementmissing from the sequence between bases 27800 and 29600. | |||
| Finished Right | 38987 | 38990 | F36D3 | ||
| Clone right end | 38987 | 38990 | F36D3 (but no anchoring overlap data to confirm whether this is the right or left end) | ||
| Method | Genomic_canonical |
