WormBase Tree Display for CDS: F27C1.8
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| F27C1.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F27C1 | |||
| Structure | Source_exons | 1 | 855 | |||
| DB_info | Database | SwissProt | UniProtAcc | P91285 | ||
| UniProt | UniProtAcc | P91285 | ||||
| UniProt_GCRP | UniProtAcc | P91285 | ||||
| AlphaFold | entry | P91285 | ||||
| NCBI_protein | GI_number | GI:373219170 | ||||
| TREEFAM | TREEFAM_ID | TF316783 | ||||
| Protein_id | CHROMOSOME_I | CCD66289 | 1 | |||
| DB_remark | DPY-5 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001067 | ||||
| Corresponding_transcript | F27C1.8.1 | |||||
| Corresponding_protein | CE09720 | |||||
| Corresponding_PCR_product | cenix:244-b2 | |||||
| mv_F27C1.8 | ||||||
| sjj2_F27C1.8 | ||||||
| sjj_F27C1.8 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (1689) | ||||||
| RNAi_result (25) | ||||||
| Microarray_results | SMD_F27C1.8 | |||||
| 190360_s_at | ||||||
| A_12_P100591 | ||||||
| A_12_P148990 | ||||||
| Aff_F27C1.8 | ||||||
| GPL13394_WBGene00001067 | ||||||
| GPL13914_F27C1.8 | ||||||
| GPL14144_F27C1.8_361-420_0.926_3_B | ||||||
| GPL14144_F27C1.8_668-727_0.951_2_C | ||||||
| GPL14144_F27C1.8_677-736_0.966_1_A | ||||||
| GPL19516_CGZ0018499 | ||||||
| GPL21109_F27C1.8 | ||||||
| GPL3518_CE09720 | ||||||
| GPL8304_CE_WBGene00001067_A | ||||||
| GPL8673_F27C1_8P00017 | ||||||
| GPL8673_F27C1_8P00024 | ||||||
| GPL8673_F27C1_8P00135 | ||||||
| GPL9450_F27C1.8 | ||||||
| cea2.p.08306 | ||||||
| Brief_identification | Cuticle collagen dpy-5 | Accession_evidence | UniProt | SP:P91285 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
