WormBase Tree Display for CDS: F01D5.2
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| F01D5.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F01D5 | |||
| Structure | Source_exons | 1 | 242 | |||
| 294 | 453 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9XVB0 | ||
| UniProt | UniProtAcc | Q9XVB0 | ||||
| UniProt_GCRP | UniProtAcc | Q9XVB0 | ||||
| AlphaFold | entry | Q9XVB0 | ||||
| NCBI_protein | GI_number | GI:3875503 | ||||
| TREEFAM | TREEFAM_ID | TF318899 | ||||
| Protein_id | CHROMOSOME_II | CAB04040 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF01549 (ShK domain-like); contains similarity to Interpro domain IPR003582 (ShKT domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00008493 | ||||
| Corresponding_transcript | F01D5.2.1 | |||||
| Corresponding_protein | CE18560 | |||||
| Corresponding_PCR_product | cenix:194-a9 | |||||
| mv_F01D5.2 | ||||||
| sjj_F01D5.2 | ||||||
| Corresponding_oligo_set | 178273_at | |||||
| A_12_P104424 | ||||||
| Aff_F01D5.2 | ||||||
| GPL13394_WBGene00008493 | ||||||
| GPL13914_F01D5.2 | ||||||
| GPL14144_F01D5.2_321-380_0.935_3_A | ||||||
| GPL19516_CGZ0014292 | ||||||
| GPL21109_F01D5.2 | ||||||
| GPL3518_CE18560 | ||||||
| GPL8304_CE_WBGene00008493_A | ||||||
| GPL8673_F01D5_2P00068 | ||||||
| GPL8673_F01D5_2P00071 | ||||||
| GPL8673_F01D5_2P00323 | ||||||
| GPL9450_F01D5.2 | ||||||
| cea2.i.61248 | ||||||
| cea2.i.61249 | ||||||
| cea2.i.61252 | ||||||
| Matching_cDNA | male_Nanopore_Roach_107294 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_85764 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_69262 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_43501 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_63764 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG2843|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_305049 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_291056 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF096C6_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00012725 | |||||
| WBRNAi00103250 | ||||||
| WBRNAi00043728 | ||||||
| WBRNAi00030527 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | ShKT domain-containing protein | Accession_evidence | UniProt | TR:Q9XVB0 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
