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WormBase Tree Display for CDS: CRE03761

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Name Class

CRE03761SMapS_parentSequenceCrem_Contig11
StructureSource_exons181
127270
440923
10441224
12862033
21112269
DB_infoDatabaseTREEFAMTREEFAM_IDTF314167
DB_remarkCRE-UNC-37 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF03920 (Groucho/TLE N-terminal Q-rich domain); contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR005617 (Groucho/TLE, N-terminal Q-rich domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR009146 (Groucho/transducin-like enhancer), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00060607
Corresponding_transcriptCRE03761.1
Corresponding_proteinRP21626
Corresponding_oligo_setGPL14146_CRE03761_1334-1393_0.914_22_B
GPL14146_CRE03761_1487-1546_0.941_9_C
GPL14146_CRE03761_1601-1660_0.908_27_A
Matching_cDNADT935520Inferred_automaticallytranscript_builder.pl
DR776894Inferred_automaticallytranscript_builder.pl
DY526028Inferred_automaticallytranscript_builder.pl
DR409405Inferred_automaticallytranscript_builder.pl
DR778930Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE03761_1334-1393_0.914_22_B
GPL14146_CRE03761_1487-1546_0.941_9_C
GPL14146_CRE03761_1601-1660_0.908_27_A
RNASeq_FPKMWBls:000000482.1618From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
83.8435From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (54)
WBls:000002732.4979From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
38.778From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
40.2363From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
8.59565From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003827.5906From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
30.9716From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
7.25314From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004114.4032From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
15.7444From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
17.4015From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
39.5152From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
39.8505From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
41.2803From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:000006316.5371From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
17.6677From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
17.8241From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
17.977From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
18.4474From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
19.042From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
20.8223From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
21.4893From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
23.1061From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
9.88652From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
Remarkmodified a splice site based on EST data[20100928 po]Accession_evidenceEMBLDR409405
Methodcurated