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WormBase Tree Display for CDS: CJA24831a

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Name Class

CJA24831aSMapS_parentSequenceCjap.Contig17617
StructureSource_exons1114
2541009
25602786
37073716
DB_infoDatabaseTREEFAMTREEFAM_IDTF351794
DB_remarkCJP-UNC-129 protein; contains similarity to Pfam domain PF00019 (Transforming growth factor beta like domain); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001839 (Transforming growth factor-beta, C-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00180403
Corresponding_transcriptCJA24831a.1
Corresponding_proteinJA62362
Corresponding_oligo_setGPL14145_CJA04543_232-291_0.768_97_B
GPL14145_CJA04543_536-595_0.900_30_C
GPL14145_CJA24831_110-169_0.954_1_A
Matching_cDNAjaponica_GG13611|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA04543_232-291_0.768_97_B
GPL14145_CJA04543_536-595_0.900_30_C
GPL14145_CJA24831_110-169_0.954_1_A
RNASeq_FPKMWBls:00000042.5e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.4e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.000172From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
3.9e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.000213From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.00134From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.3e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.8e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
3e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.6e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
3.8e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
7.9e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17617.g18695.t1[100726 mh6]
Methodcurated