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WormBase Tree Display for CDS: CJA18806

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Name Class

CJA18806EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17130
StructureSource_exons (17)
DB_infoDB_remarkCJP-UNC-36 protein; contains similarity to Pfam domains PF00092 (von Willebrand factor type A domain), PF08399 (VWA N-terminal); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR013608 (VWA N-terminal), IPR002035 (von Willebrand factor, type A)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138010
Corresponding_transcriptCJA18806.1
Corresponding_proteinJA50743
Corresponding_oligo_setGPL14145_CJA18806_468-527_0.775_142_C
GPL14145_CJA18806_3252-3311_0.615_420_B
GPL14145_CJA18806_3423-3482_0.938_2_A
Matching_cDNAjaponica_GG10261|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG19471|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA18806_3252-3311_0.615_420_B
GPL14145_CJA18806_3423-3482_0.938_2_A
GPL14145_CJA18806_468-527_0.775_142_C
RNASeq_FPKMWBls:000000414.736From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002714.7617From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.9297From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
8.33274From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000411.37424From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.50748From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.64461From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.30944From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.40171From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.43837From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.60563From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
4.7934From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17130.g14016.t1[100726 mh6]
Methodcurated