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WormBase Tree Display for CDS: CJA18480

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Name Class

CJA18480EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig11780
StructureSource_exons1296
8932648
58296746
83628462
85288773
1004110566
1061210683
1179011987
DB_infoDatabaseTREEFAMTREEFAM_IDTF323256
DB_remarkCJP-DPY-21 protein; contains similarity to Interpro domain IPR026306 (RSBN1/Dpy-21)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00137687
Corresponding_transcriptCJA18480.1
Corresponding_proteinJA61578
Corresponding_oligo_setGPL14145_CJA13997_573-632_0.938_1_A
GPL14145_CJA13997_702-761_0.932_3_C
GPL14145_CJA13997_851-910_0.935_2_B
GPL14145_CJA18480_1087-1146_0.669_137_A
GPL14145_CJA18480_1157-1216_0.935_1_B
GPL14145_CJA22847_171-230_0.940_1_A
Matching_cDNAjaponica_GG17462|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG17462|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA13997_573-632_0.938_1_A
GPL14145_CJA13997_702-761_0.932_3_C
GPL14145_CJA13997_851-910_0.935_2_B
GPL14145_CJA18480_1087-1146_0.669_137_A
GPL14145_CJA18480_1157-1216_0.935_1_B
GPL14145_CJA22847_171-230_0.940_1_A
RNASeq_FPKMWBls:000000462.4881From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002730.1894From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003816.3933From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
17.749From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004134.7121From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
37.0673From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
39.9462From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
50.1674From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
5.51652From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
6.35645From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
7.06989From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
9.45748From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig11780.g7884.t1[100726 mh6]
Methodcurated