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WormBase Tree Display for CDS: CJA16804

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Name Class

CJA16804EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18178
StructureSource_exons162
9231083
11331278
20502151
25912752
29583071
31183197
40904207
DB_infoDatabaseTREEFAMTREEFAM_IDTF351940
DB_remarkCJP-UNC-30 protein; contains similarity to Pfam domain PF00046 (Homeodomain); contains similarity to Interpro domains IPR016233 (Homeobox protein Pitx/unc30), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136008
Corresponding_transcriptCJA16804.1
Corresponding_proteinJA07359
Corresponding_oligo_setGPL14145_CJA16804_492-551_0.911_4_B
GPL14145_CJA16804_684-743_0.924_2_C
GPL14145_CJA16804_863-922_0.909_5_A
Matching_cDNAFF129902Inferred_automaticallytranscript_builder.pl
japonica_GG9491|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16804_492-551_0.911_4_B
GPL14145_CJA16804_684-743_0.924_2_C
GPL14145_CJA16804_863-922_0.909_5_A
RNASeq_FPKMWBls:000000417.4883From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000279.1097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000383.86361From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
5.54166From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.495968From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.67507From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.686845From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.759185From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.879862From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.45256From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.48116From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.62044From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18178.g26850.t1[100726 mh6]
Methodcurated