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WormBase Tree Display for CDS: CJA16793b

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Name Class

CJA16793bSMapS_parentSequenceCjap.Contig16498
StructureSource_exons (16)
DB_infoDatabaseTREEFAMTREEFAM_IDTF329881
DB_remarkCJP-UNC-53 protein; contains similarity to Interpro domains IPR039041 (Nav/unc-53 family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00135997
Corresponding_transcriptCJA16793b.1
Corresponding_proteinJA40045
Corresponding_oligo_setGPL14145_CJA16793_1241-1300_0.879_32_C
GPL14145_CJA16793_1315-1374_0.933_1_B
GPL14145_CJA16793_1540-1599_0.795_107_A
GPL14145_CJA22615_942-1001_0.934_3_C
GPL14145_CJA22615_1139-1198_0.938_2_B
GPL14145_CJA22615_1150-1209_0.951_1_A
GPL14145_CJA24585_1020-1079_0.949_1_A
Microarray_resultsGPL14145_CJA16793_1241-1300_0.879_32_C
GPL14145_CJA16793_1315-1374_0.933_1_B
GPL14145_CJA16793_1540-1599_0.795_107_A
GPL14145_CJA22615_1139-1198_0.938_2_B
GPL14145_CJA22615_1150-1209_0.951_1_A
GPL14145_CJA22615_942-1001_0.934_3_C
GPL14145_CJA24585_1020-1079_0.949_1_A
RNASeq_FPKMWBls:00000040.015278From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.029754From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.03284From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
2.34164From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.00345From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.006756From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.007From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.007274From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.009874From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.01341From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.019545From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.498476From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig16498.g11721.t2[100726 mh6]
Methodcurated