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WormBase Tree Display for CDS: CJA16793a

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Name Class

CJA16793aSMapS_parentSequenceCjap.Contig16498
StructureSource_exons (16)
DB_infoDB_remarkCJP-UNC-53 protein; contains similarity to Interpro domains IPR039041 (Nav/unc-53 family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00135997
Corresponding_transcriptCJA16793a.1
Corresponding_proteinJA44047
Corresponding_oligo_setGPL14145_CJA16793_1241-1300_0.879_32_C
GPL14145_CJA16793_1315-1374_0.933_1_B
GPL14145_CJA16793_1540-1599_0.795_107_A
GPL14145_CJA22615_942-1001_0.934_3_C
GPL14145_CJA22615_1139-1198_0.938_2_B
GPL14145_CJA22615_1150-1209_0.951_1_A
GPL14145_CJA24585_1020-1079_0.949_1_A
Matching_cDNAjaponica_GG8050|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16793_1241-1300_0.879_32_C
GPL14145_CJA16793_1315-1374_0.933_1_B
GPL14145_CJA16793_1540-1599_0.795_107_A
GPL14145_CJA22615_1139-1198_0.938_2_B
GPL14145_CJA22615_1150-1209_0.951_1_A
GPL14145_CJA22615_942-1001_0.934_3_C
GPL14145_CJA24585_1020-1079_0.949_1_A
RNASeq_FPKMWBls:000000459.5097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002734.1513From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003813.3013From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
14.4246From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000413.94072From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
4.45831From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.59477From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
4.98061From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
5.29287From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
5.7212From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
6.14538From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
9.65752From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16498.g11721.t1[100726 mh6]
Methodcurated