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WormBase Tree Display for CDS: CJA14489

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Name Class

CJA14489SMapS_parentSequenceCjap.Contig18191
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF312844
DB_remarkcontains similarity to Pfam domains PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF00168 (C2 domain); contains similarity to Interpro domains IPR020454 (Diacylglycerol/phorbol-ester binding), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR027080 (Protein Unc-13), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00133693
Corresponding_transcriptCJA14489.1
Corresponding_proteinJA46231
RNASeq_FPKMWBls:00000049.43285From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000279.69158From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000385.19286From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
6.11135From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.913384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.45186From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.49097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.09356From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.21637From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.25309From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.40995From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
4.0424From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18191.g27539.t1[100726 mh6]
Methodcurated