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WormBase Tree Display for CDS: CJA13016

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Name Class

CJA13016EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig981
StructureSource_exons168
122611
29333175
DB_infoDatabaseTREEFAMTREEFAM_IDTF101080
DB_remarkCJP-UNC-61 protein; contains similarity to Pfam domain PF00735 (Septin); contains similarity to Interpro domains IPR016491 (Septin), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR030379 (Septin-type guanine nucleotide-binding (G) domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00132220
Corresponding_transcriptCJA13016.1
Corresponding_proteinJA49056
Corresponding_oligo_setGPL14145_CJA13016_111-170_0.935_4_C
GPL14145_CJA13016_313-372_0.939_3_A
GPL14145_CJA13016_450-509_0.932_5_B
GPL14145_CJA29335_272-331_0.955_1_A
Microarray_resultsGPL14145_CJA13016_111-170_0.935_4_C
GPL14145_CJA13016_313-372_0.939_3_A
GPL14145_CJA13016_450-509_0.932_5_B
GPL14145_CJA29335_272-331_0.955_1_A
RNASeq_FPKMWBls:000000432.8195From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002714.0578From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003812.5393From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
7.66653From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004112.198From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
13.2316From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
13.4096From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
17.83From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
24.3668From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
40.5053From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
40.5822From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
49.2877From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig981.g778.t1[100726 mh6]
Methodcurated