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WormBase Tree Display for CDS: CJA12826

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Name Class

CJA12826EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18209
StructureSource_exons1124
7861015
10741264
13151608
16651928
34803874
41155159
52105571
60246475
DB_infoDatabaseTREEFAMTREEFAM_IDTF354311
DB_remarkCJP-UNC-26 protein; contains similarity to Pfam domains PF02383 (SacI homology domain), PF03372 (Endonuclease/Exonuclease/phosphatase family), PF08952 (Domain of unknown function (DUF1866)); contains similarity to Interpro domains IPR002013 (SAC domain), IPR000300 (Inositol polyphosphate-related phosphatase), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily), IPR015047 (Synaptojanin-1/2, RNA recognition motif)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00132030
Corresponding_transcriptCJA12826.1
Corresponding_proteinJA49247
Corresponding_oligo_setGPL14145_CJA12826_2048-2107_0.852_53_C
GPL14145_CJA12826_2221-2280_0.858_51_B
GPL14145_CJA12826_2262-2321_0.850_61_A
Matching_cDNAjaponica_GG9455|c11_g1_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA12826_2048-2107_0.852_53_C
GPL14145_CJA12826_2221-2280_0.858_51_B
GPL14145_CJA12826_2262-2321_0.850_61_A
RNASeq_FPKMWBls:000000421.4524From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002718.1514From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003813.5741From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
13.6184From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004117.5409From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
19.6766From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
19.8803From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
27.9309From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
6.75183From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
6.97576From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
7.85813From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
9.02521From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18209.g28470.t1[100726 mh6]
Methodcurated