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WormBase Tree Display for CDS: CJA11043

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Name Class

CJA11043EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18027
StructureSource_exons1214
17112126
23922427
29713093
31433233
48984986
DB_infoDatabaseTREEFAMTREEFAM_IDTF316296
DB_remarkCJP-UNC-49 protein; contains similarity to Pfam domain PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00130247
Corresponding_transcriptCJA11043.1
CJA11043.2
Corresponding_proteinJA67164
Corresponding_oligo_setGPL14145_CJA11043_1762-1821_0.644_86_C
GPL14145_CJA11043_1871-1930_0.645_85_A
Matching_cDNAjaponica_GG284|c1_g1_i3Inferred_automaticallytranscript_builder.pl
japonica_GG284|c1_g1_i4Inferred_automaticallytranscript_builder.pl
japonica_GG284|c1_g1_i6Inferred_automaticallytranscript_builder.pl
japonica_GG14570|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG14571|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA11043_1762-1821_0.644_86_C
GPL14145_CJA11043_1871-1930_0.645_85_A
RNASeq_FPKMWBls:000000410.1184From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002718.9385From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000389.49729From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
9.80087From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000412.07877From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.48845From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.70671From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
3.29486From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.35755From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
3.61255From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.73628From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
4.04053From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig18027.g23481.t1[100726 mh6]
Methodcurated