WormBase Tree Display for CDS: CJA10991

CJA10991 Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig2995
  Structure: Source_exons: 1 106
      746 836
      882 986
      1091 1207
      1267 1355
      1413 1495
      1852 1935
      1980 2115
      2175 2252
      2306 2484
  DB_info: DB_remark: CJP-CEH-14 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF00412 (LIM domain); contains similarity to Interpro domains IPR001781 (Zinc finger, LIM-type), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Confirmed
  Visible: Gene: WBGene00130195
    Corresponding_transcript: CJA10991.1
    Corresponding_protein: JA02970
    Corresponding_oligo_set: GPL14145_CJA10991_540-599_0.914_4_B
      GPL14145_CJA10991_633-692_0.904_9_C
      GPL14145_CJA10991_758-817_0.918_3_A
    Microarray_results: GPL14145_CJA10991_540-599_0.914_4_B
      GPL14145_CJA10991_633-692_0.904_9_C
      GPL14145_CJA10991_758-817_0.918_3_A
    RNASeq_FPKM: WBls:0000004 5.1019 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 4.78154 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.52072 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        1.76831 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 0.373918 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        0.812468 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.840727 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        0.878529 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        1.35567 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        1.4266 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        2.01729 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        2.33045 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
    Remark: based on Augustus prediction Cjap.Contig2995.g2124.t1[100726 mh6]
  Method: curated