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WormBase Tree Display for CDS: CJA09911a

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Name Class

CJA09911aSMapS_parentSequenceCjap.Contig18211
StructureSource_exons1117
175219
317638
17232616
28112944
31963963
56386699
81388230
DB_infoDatabaseTREEFAMTREEFAM_IDTF300393
DB_remarkCJP-UNC-41 protein; contains similarity to Pfam domain PF00928 (Adaptor complexes medium subunit family); contains similarity to Interpro domains IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00129115
Corresponding_transcriptCJA09911a.1
Corresponding_proteinJA43213
Corresponding_oligo_setGPL14145_CJA09911_3739-3798_0.844_72_B
GPL14145_CJA09911_3904-3963_0.933_13_A
GPL14145_CJA09911_4139-4198_0.970_1_C
Microarray_resultsGPL14145_CJA09911_3739-3798_0.844_72_B
GPL14145_CJA09911_3904-3963_0.933_13_A
GPL14145_CJA09911_4139-4198_0.970_1_C
RNASeq_FPKMWBls:00000040.00068From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.000686From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.00061From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.003219From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000563From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.000718From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.00073From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.003663From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.033855From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.466475From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.609025From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.923346From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18211.g28773.t2[100726 mh6]
Methodcurated