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WormBase Tree Display for CDS: CJA07521b

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Name Class

CJA07521bSMapS_parentSequenceCjap.Contig16513
StructureSource_exons (15)
DB_infoDatabaseTREEFAMTREEFAM_IDTF331962
DB_remarkCJP-UNC-89 protein; contains similarity to Pfam domains PF05177 (RCSD region), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR009057 (Homeobox-like domain superfamily), IPR007850 (RCSD)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00126725
Corresponding_transcriptCJA07521b.1
Corresponding_proteinJA51602
Corresponding_oligo_setGPL14145_CJA07521_18320-18379_0.845_32_A
GPL14145_CJA07521_18779-18838_0.928_1_B
GPL14145_CJA07521_18783-18842_0.919_2_C
Microarray_resultsGPL14145_CJA07521_18320-18379_0.845_32_A
GPL14145_CJA07521_18779-18838_0.928_1_B
GPL14145_CJA07521_18783-18842_0.919_2_C
RNASeq_FPKMWBls:00000040.006907From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.006913From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.009212From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.031801From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.001668From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.002004From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.002107From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.002434From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.003377From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.00344From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.007255From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.007393From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16513.g11796.t1[100726 mh6]
Methodcurated