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WormBase Tree Display for CDS: CJA07513

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Name Class

CJA07513EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18194
StructureSource_exons174
739839
9021081
11301322
13721521
15721650
16991817
19071973
DB_infoDB_remarkCJP-STO-2 protein; contains similarity to Pfam domain PF01145 (SPFH domain / Band 7 family); contains similarity to Interpro domains IPR036013 (Band 7/SPFH domain superfamily), IPR001107 (Band 7 domain), IPR001972 (Stomatin/HflK family), IPR043202 (Band-7 stomatin-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126717
Corresponding_transcriptCJA07513.1
CJA07513.2
Corresponding_proteinJA29863
Corresponding_oligo_setGPL14145_CJA07513_568-627_0.908_8_A
GPL14145_CJA07513_714-773_0.754_71_C
GPL14145_CJA07513_920-979_0.870_25_B
Matching_cDNAjaponica_GG12733|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG12733|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07513_568-627_0.908_8_A
GPL14145_CJA07513_714-773_0.754_71_C
GPL14145_CJA07513_920-979_0.870_25_B
RNASeq_FPKMWBls:00000047.82843From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000277.99575From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384.6246From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
7.23498From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.82102From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.835295From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.10995From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1.57007From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.12461From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.37097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.4526From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.47956From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18194.g27709.t1[100726 mh6]
Methodcurated