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WormBase Tree Display for CDS: CJA05524

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Name Class

CJA05524EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18206
StructureSource_exons151
108602
656840
20002342
33064494
45444836
DB_infoDB_remarkCJP-SPR-3 protein; contains similarity to Interpro domain IPR013087 (Zinc finger C2H2-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00124728
Corresponding_transcriptCJA05524.1
Corresponding_proteinJA18069
Corresponding_oligo_setGPL14145_CJA05524_59-118_0.430_593_C
GPL14145_CJA05524_874-933_0.799_172_A
GPL14145_CJA05524_981-1040_0.621_433_B
Matching_cDNAjaponica_GG6554|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA05524_59-118_0.430_593_C
GPL14145_CJA05524_874-933_0.799_172_A
GPL14145_CJA05524_981-1040_0.621_433_B
RNASeq_FPKMWBls:000000429.0113From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000278.37375From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000385.17483From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
6.20662From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004118.784From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
27.3887From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
27.8065From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
28.336From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
3.16956From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
4.1846From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
4.20527From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
4.69516From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig18206.g28382.t1[100726 mh6]
Methodcurated