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WormBase Tree Display for CDS: CJA04577

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Name Class

CJA04577EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18202
StructureSource_exons1145
391573
6301033
DB_infoDB_remarkCJP-UNC-95 protein; contains similarity to Pfam domain PF00412 (LIM domain); contains similarity to Interpro domain IPR001781 (Zinc finger, LIM-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00123782
Corresponding_transcriptCJA04577.1
Corresponding_proteinJA27699
Corresponding_oligo_setGPL14145_CJA04577_226-285_0.935_6_C
GPL14145_CJA04577_566-625_0.935_7_B
GPL14145_CJA04577_659-718_0.953_1_A
Matching_cDNAFF112588Inferred_automaticallytranscript_builder.pl
FF116962Inferred_automaticallytranscript_builder.pl
japonica_GG15369|c10_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA04577_226-285_0.935_6_C
GPL14145_CJA04577_566-625_0.935_7_B
GPL14145_CJA04577_659-718_0.953_1_A
RNASeq_FPKMWBls:000000472.4606From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002753.2878From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003848.3071From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
55.5877From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004115.0182From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
17.2707From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
19.1308From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
19.4987From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
30.0855From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
31.9099From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
33.5625From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
33.7853From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18202.g28144.t1[100726 mh6]
Methodcurated