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WormBase Tree Display for CDS: CJA03629a

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Name Class

CJA03629aEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17796
StructureSource_exons (15)
DB_infoDatabaseTREEFAMTREEFAM_IDTF312843
DB_remarkCJP-UNC-77 protein; contains similarity to Pfam domain PF00520 (Ion transport protein); contains similarity to Interpro domains IPR005821 (Ion transport domain), IPR028823 (Sodium leak channel NALCN), IPR027359 (Voltage-dependent channel domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00122833
Corresponding_transcriptCJA03629a.1
Corresponding_proteinJA45214
Corresponding_oligo_setGPL14145_CJA03629_3073-3132_0.902_3_C
GPL14145_CJA03629_3272-3331_0.598_375_B
GPL14145_CJA03629_3394-3453_0.808_67_A
Matching_cDNAjaponica_GG652|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG652|c5_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG2899|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03629_3073-3132_0.902_3_C
GPL14145_CJA03629_3272-3331_0.598_375_B
GPL14145_CJA03629_3394-3453_0.808_67_A
RNASeq_FPKMWBls:00000041.17278From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271.63573From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.728515From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
0.933035From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.121025From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.15913From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.209683From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.228932From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.279253From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.299323From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.324732From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17796.g20224.t2[100726 mh6]
Methodcurated