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WormBase Tree Display for CDS: CJA03444a

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Name Class

CJA03444aSMapS_parentSequenceCjap.Contig7764
StructureSource_exons160
16231886
23762834
DB_infoDB_remarkCJP-LIN-22 protein; contains similarity to Interpro domains IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00122648
Corresponding_transcriptCJA03444a.1
Corresponding_proteinJA49175
Corresponding_oligo_setGPL14145_CJA03444_1-60_0.621_55_C
GPL14145_CJA03444_160-219_0.911_3_B
GPL14145_CJA03444_357-416_0.852_10_A
Microarray_resultsGPL14145_CJA03444_1-60_0.621_55_C
GPL14145_CJA03444_160-219_0.911_3_B
GPL14145_CJA03444_357-416_0.852_10_A
RNASeq_FPKMWBls:00000040From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.00115From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
4e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.183172From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.200512From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.242408From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
6e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig7764.g5528.t1[100726 mh6]
Methodcurated