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WormBase Tree Display for CDS: CJA02489

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Name Class

CJA02489SMapS_parentSequenceCjap.Contig18106
StructureSource_exons1104
152302
358465
8101088
23582646
29043224
36313791
51295205
77738045
84928594
DB_infoDB_remarkCJP-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00121693
Corresponding_transcriptCJA02489.1
Corresponding_proteinJA64302
Corresponding_oligo_setGPL14145_CJA02489_871-930_0.920_1_C
GPL14145_CJA02489_1097-1156_0.737_35_B
GPL14145_CJA02489_1329-1388_0.530_97_A
Matching_cDNAjaponica_GG1123|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG7059|c2_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA02489_1097-1156_0.737_35_B
GPL14145_CJA02489_1329-1388_0.530_97_A
GPL14145_CJA02489_871-930_0.920_1_C
RNASeq_FPKMWBls:000000465.1201From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002739.9749From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003822.9533From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
28.1146From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004111.1164From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
12.2909From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
13.8993From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
19.8636From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
20.4332From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
21.3278From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
5.14377From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
9.53204From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig18106.g24966.t1[100726 mh6]
Methodcurated