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WormBase Tree Display for CDS: CJA00610

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Name Class

CJA00610EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17880
StructureSource_exons (12)
DB_infoDB_remarkCJP-UNC-6 protein; contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF00055 (Laminin N-terminal (Domain VI)), PF01759 (UNC-6/NTR/C345C module); contains similarity to Interpro domains IPR008993 (Tissue inhibitor of metalloproteinases-like, OB-fold), IPR008211 (Laminin, N-terminal), IPR002049 (Laminin-type EGF domain), IPR018933 (Netrin module, non-TIMP type), IPR038684 ()
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00119812
Corresponding_transcriptCJA00610.1
Corresponding_proteinJA52586
Corresponding_oligo_setGPL14145_CJA00610_836-895_0.862_28_B
GPL14145_CJA00610_908-967_0.806_74_A
GPL14145_CJA00610_931-990_0.865_24_C
Microarray_resultsGPL14145_CJA00610_836-895_0.862_28_B
GPL14145_CJA00610_908-967_0.806_74_A
GPL14145_CJA00610_931-990_0.865_24_C
RNASeq_FPKMWBls:000000444.4559From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002710.6898From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.4912From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
11.8606From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.889253From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.45481From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.17316From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.26259From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.79778From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.47697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
4.19982From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.33217From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig17880.g21129.t1[100726 mh6]
Methodcurated