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WormBase Tree Display for CDS: CJA00446

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Name Class

CJA00446SMapS_parentSequenceCjap.Contig18051
StructureSource_exons13
568685
17371906
19472082
21312269
23162515
27412808
DB_infoDatabaseTREEFAMTREEFAM_IDTF313391
DB_remarkCJP-UNC-3 protein; contains similarity to Pfam domains PF01833 (IPT/TIG domain), PF16422 (Transcription factor COE1 DNA-binding domain), PF16423 (Transcription factor COE1 helix-loop-helix domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR002909 (IPT domain), IPR038173 (Transcription factor COE, DNA-binding domain superfamily), IPR032200 (Transcription factor COE, DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR032201 (Transcription factor COE, helix-loop-helix domain), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR003523 (Transcription factor COE)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00119650
Corresponding_transcriptCJA00446.1
Corresponding_proteinJA63633
Corresponding_oligo_setGPL14145_CJA00446_812-871_0.875_20_C
GPL14145_CJA00446_1085-1144_0.904_11_B
GPL14145_CJA00446_1202-1261_0.920_5_A
Microarray_resultsGPL14145_CJA00446_1085-1144_0.904_11_B
GPL14145_CJA00446_1202-1261_0.920_5_A
GPL14145_CJA00446_812-871_0.875_20_C
RNASeq_FPKMWBls:000000417.4365From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000276.29118From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.07828From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
3.82902From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.173778From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.342456From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.37114From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.445882From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.451482From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.24432From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.4337From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.52777From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18051.g23828.t1[100726 mh6]
Methodcurated