WormBase Tree Display for Operon: CEOP4672
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CEOP4672 | SMap | S_parent | Canonical_parent | CHROMOSOME_IV | |
---|---|---|---|---|---|
Species | Caenorhabditis elegans | ||||
Contains_gene | WBGene00019046 | SL2 | Person_evidence | WBPerson71 | |
Curator_confirmed | WBPerson1983 | ||||
From_analysis | RNASeq_Hillier_elegans | ||||
WBGene00019047 | SL1 | Feature_evidence | WBsf015311 | ||
SL2 | From_analysis | modENCODE_Waterston_RNAseq | |||
Description | C. elegans Operon - These exist as closely spaced gene clusters similar to bacterial operons. | ||||
Method | operon | ||||
History | Deprecated | [110322 pad] Deprecated following 2010 re-analysis based on RNASeq data. | Person_evidence | WBPerson71 | |
Curator_confirmed | WBPerson1983 | ||||
Remark | [090729 pad] New operon defined by SL1 and SL2 data as identified by RNAseq deep sequencing data produced by Hillier L. et al. | Person_evidence | WBPerson71 | ||
From_analysis | modENCODE_Waterston_RNAseq | ||||
[110322 pad] This operon has been re-assesed based on the modENCODE Waterston RNASeq data. The number of SL2 reads for each downstream gene in these operons does not achieve the 5% cutoff so has been removed from the operon set. | Person_evidence | WBPerson71 | |||
Curator_confirmed | WBPerson1983 | ||||
From_analysis | RNASeq_Hillier_elegans | ||||
[110408 pad] Removed WBGene00019048 Added WBGene00019046 following personal communication, based on RNASeq data. | Person_evidence | WBPerson71 | |||
Curator_confirmed | WBPerson1983 | ||||
From_analysis | RNASeq_Hillier_elegans |