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WormBase Tree Display for CDS: CBN29421

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Name Class

CBN29421SMapS_parentSequenceCbre_Contig112
StructureSource_exons151
97165
217315
400606
669986
DB_infoDatabaseTREEFAMTREEFAM_IDTF313937
DB_remarkCBN-CHN-1 protein; contains similarity to Pfam domains PF00515 (Tetratricopeptide repeat), PF04564 (U-box domain), PF13181 (Tetratricopeptide repeat), PF18391 (CHIP N-terminal tetratricopeptide repeat domain); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR003613 (U-box domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR041312 (CHIP, N-terminal tetratricopeptide repeat domain), IPR001440 (Tetratricopeptide repeat 1), IPR019734 (Tetratricopeptide repeat)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00191386
Corresponding_transcriptCBN29421.1
Corresponding_proteinCN35145
Corresponding_oligo_setGPL14142_CBN29421_276-335_0.811_36_C
GPL14142_CBN29421_516-575_0.952_2_A
GPL14142_CBN29421_697-756_0.947_4_B
Matching_cDNAFF099025Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN29421_276-335_0.811_36_C
GPL14142_CBN29421_516-575_0.952_2_A
GPL14142_CBN29421_697-756_0.947_4_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
104.52From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
107.611From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
119.196From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
46.4933From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
55.9229From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
59.7622From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
61.063From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
63.9895From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
53.8913From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
18.0841From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
18.682From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
19.5655From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
20.0457From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
22.7405From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003825.052From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
27.5143From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (13)
Remark[20090520 js] Original name Cbre_Contig112.brenneri.jigsaw.33
Methodcurated