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WormBase Tree Display for CDS: CBN28284

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Name Class

CBN28284SMapS_parentSequenceCbre_Contig25
StructureSource_exons1123
29633138
31953345
34433550
41484399
54745738
69117068
74457521
1134611621
1172611822
DB_infoDB_remarkCBN-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00190249
Corresponding_transcriptCBN28284.1
Corresponding_proteinCN38155
Corresponding_oligo_setGPL14142_CBN28284_285-344_0.900_10_C
GPL14142_CBN28284_353-412_0.938_2_B
GPL14142_CBN28284_357-416_0.952_1_A
GPL14142_CBN28546_61-120_0.945_2_A
GPL14142_CBN28854_5-64_0.852_1_A
GPL14142_CBN29526_127-186_0.946_2_C
GPL14142_CBN29526_87-146_0.959_1_A
GPL14142_CBN29526_99-158_0.936_3_B
GPL14142_CBN30038_353-412_0.928_1_A
Matching_cDNAFF091198Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN28284_285-344_0.900_10_C
GPL14142_CBN28284_353-412_0.938_2_B
GPL14142_CBN28284_357-416_0.952_1_A
GPL14142_CBN28546_61-120_0.945_2_A
GPL14142_CBN28854_5-64_0.852_1_A
GPL14142_CBN29526_87-146_0.959_1_A
GPL14142_CBN29526_99-158_0.936_3_B
GPL14142_CBN29526_127-186_0.946_2_C
GPL14142_CBN30038_353-412_0.928_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.06From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
11.3033From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
12.0418From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
12.1178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
17.9793From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
5.84726From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
7.17054From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
8.23591From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
128.364From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
30.4254From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
34.8323From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
37.4816From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
39.7169From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
47.0951From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003816.8553From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
18.0012From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
Remark[20090520 js] Original name Cbre_Contig25.brenneri.jigsaw.106
Methodcurated