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WormBase Tree Display for CDS: CBN14621

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Name Class

CBN14621SMapS_parentSequenceCbre_Contig35
StructureSource_exons189
148402
449656
7021342
13902638
27233166
DB_infoDatabaseTREEFAMTREEFAM_IDTF314096
DB_remarkCBN-UNC-45 protein; contains similarity to Pfam domain PF11701 (Myosin-binding striated muscle assembly central); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR011989 (Armadillo-like helical), IPR024660 (UNC-45/Cro1/She4, central domain), IPR016024 (Armadillo-type fold), IPR019734 (Tetratricopeptide repeat)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00153346
Corresponding_transcriptCBN14621.1
Corresponding_proteinCN30946
Corresponding_oligo_setGPL14142_CBN14621_2129-2188_0.890_37_A
GPL14142_CBN14621_2331-2390_0.919_17_B
GPL14142_CBN14621_2551-2610_0.898_31_C
Matching_cDNAFF090395Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN14621_2129-2188_0.890_37_A
GPL14142_CBN14621_2331-2390_0.919_17_B
GPL14142_CBN14621_2551-2610_0.898_31_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.5056From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
11.7226From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
14.8229From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
15.9719From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
16.0735From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
17.038From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
17.3092From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
22.9138From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
22.7696From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
22.4648From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
26.1582From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
26.1693From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
30.3707From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
33.4042From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003837.8457From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
40.0223From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig8.brenneri.jigsaw.92.mRNA92
[20081113 db] corrected translation frame of this protein
Methodcurated