WormBase Tree Display for CDS: CBN13953

CBN13953 SMap: S_parent: Sequence: Cbre_Contig7
  Structure: Source_exons: 1 57
      106 228
      373 534
      584 664
      715 812
      882 1386
      1432 1594
      1636 2252
  DB_info: Database: TREEFAM TREEFAM_ID TF315126
    DB_remark: CBN-VPS-33.1 protein; contains similarity to Pfam domain PF00995 (Sec1 family); contains similarity to Interpro domains IPR027121 (), IPR036045 (Sec1-like superfamily), IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)
  Origin: From_laboratory: RW
    Species: Caenorhabditis brenneri
  Properties: Coding: CDS
      Prediction_status: Predicted
  Visible: Gene: WBGene00152678
    Corresponding_transcript: CBN13953.1
    Corresponding_protein: CN29350
    Corresponding_oligo_set: GPL14142_CBN13953_774-833_0.864_43_C
      GPL14142_CBN13953_794-853_0.861_47_B
      GPL14142_CBN13953_971-1030_0.887_30_A
    Microarray_results: GPL14142_CBN13953_774-833_0.864_43_C
      GPL14142_CBN13953_794-853_0.861_47_B
      GPL14142_CBN13953_971-1030_0.887_30_A
    RNASeq_FPKM: WBls:0000002 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        10.6467 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        12.7663 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        14.1667 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        14.4192 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        3.72976 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        3.85657 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        5.52556 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        9.59873 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        14.7396 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        11.933 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        12.8745 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        12.9165 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        13.6804 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        18.4635 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 14.2636 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        18.3786 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
      WBls:0000041 (15)
    Remark: [20081101 mh] original nGASP gene : Contig17.brenneri.jigsaw.23.mRNA23
      [20081113 db] corrected translation frame of this protein
  Method: curated