WormBase Tree Display for Sequence: C45E5

C45E5 DNA: C45E5 27188
  SMap: S_child: Gene_child (35)
      CDS_child: C45E5.1 13648 16058
        C45E5.1:wp104 13648 16058
        C45E5.2 10690 12218
        C45E5.2:wp240 10690 13248
        C45E5.3:wp240 9065 10109
        C45E5.4 4299 6159
        C45E5.5:wp15 1529 80
        C45E5.6a 19128 16990
        C45E5.6b 27053 16990
        C45E5.6c 18604 16990
        C45E5.6d:wp275 26918 16990
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g87_x12_IV_p 15311 15376
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g119_x12_IV_p 5834 6167
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g104_x12_IV_p 5371 5469
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g71_x12_IV_p 9104 9326
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g40n11_x12_IV_m 19128 16993
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g62_x12_IV_p 5371 6156
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g40_x12_IV_m 18852 16993
        RNASEQ_embryo_him-8_20dC_post-L1_g12n11_x12_IV_m 19128 16993
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g126_x12_IV_p 15957 16004
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g24n11_x12_IV_m 19128 16993
        RNASEQ_L4_soma_JK1107_no_DNaseI_g84_x12_IV_p 4344 5349
        RNASEQ_L4_soma_JK1107_no_DNaseI_g87_x12_IV_p 5747 6197
        RNASEQ_L4_soma_JK1107_no_DNaseI_g31n11_x12_IV_m 19128 16993
        RNASEQ_L4_soma_JK1107_no_DNaseI_g43n11_x12_IV_m 909 637
        RNASEQ_L4_soma_JK1107_no_DNaseI_g44n11_x12_IV_p 13648 14345
        RNASEQ_L4_soma_JK1107_no_DNaseI_g66_x12_IV_p 15311 16034
        RNASEQ_L4_soma_JK1107_no_DNaseI_g67_x12_IV_m 517 467
        RNASEQ_early_embryo_g68_x12_IV_p 13843 15580
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g72_x12_IV_p 14271 16055
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g35n11_x12_IV_m 27053 16993
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g32n11_x12_IV_p 13648 16055
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g57_x12_IV_p 5371 6156
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g57_x12_IV_p 5371 6156
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g20n11_x12_IV_m 19128 16993
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g19n11_x12_IV_m 19128 16993
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g106_x12_IV_p 15311 15442
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g84_x12_IV_p 5464 5762
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g21n11_x12_IV_m 19128 16993
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g69n11_x12_IV_p 13648 14348
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g77_x12_IV_p 15551 15965
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g96_x12_IV_p 15311 15487
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g33n11_x12_IV_m 19128 16993
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g34n11_x12_IV_p 13648 16055
        C45E5.gc1 909 89
        C45E5.gc2 4299 6159
        C45E5.gc3 8815 10109
        C45E5.gc4 11352 12218
        C45E5.gc5 13150 16058
        C45E5.gc6 27100 16990
        ContigIV.elegans.jigsaw.1030.mRNA1030 27053 16617
        ContigIV.elegans.jigsaw.1026.mRNA1026 4262 6343
        ContigIV.elegans.jigsaw.1028.mRNA1028 10690 12687
        ContigIV.elegans.jigsaw.1029.mRNA1029 13602 16388
        ContigIV.elegans.jigsaw.1027.mRNA1027 7149 10230
        AG1201_H35B03.2.T2 909 413
        AG1201_H35B03.2.T3 783 416
        AG1201_H35B03.2.T1 909 473
        AG1201_C45E5.4.T1 4299 6159
        AG1201_RIT4M.1835.T1 6981 6341
        AG1201_C45E5.3.T2 9065 9818
        AG1201_C45E5.3.T1 9414 9818
        AG1201_RIT4M.580.T2 9512 9441
        AG1201_RIT4M.580.T1 10059 9949
        AG1201_C45E5.2.T1 10690 11057
        AG1201_C45E5.2.T2 10690 12218
        AG1201_RIT4M.612.T1 11744 11511
        AG1201_RIT4M.612.T2 11786 11511
        AG1201_C45E5.1.T2 13648 16058
        AG1201_C45E5.1.T1 13843 16058
        AG1201_C45E5.6.T1 18333 16990
        AG1201_C45E5.6.T8 18604 16990
        AG1201_C45E5.6.T4 19128 16990
        AG1201_C45E5.6.T10 26918 16990
        AG1201_C45E5.6.T3 26918 16990
        AG1201_C45E5.6.T5 27053 16990
      Transcript (54)
      Pseudogene: C45E5.3 8815 10079
      PCR_product (16)
      Allele (214)
      Oligo_set: Aff_C45E5.1 14370 16058
        Aff_C45E5.2 11859 13248
        Aff_C45E5.3 9372 10109
        Aff_C45E5.4 4299 6159
        Aff_C45E5.6 17684 16990
      Feature_object (186)
      Feature_data: C45E5:Polysome 1 27188
        C45E5:TranscriptionallyActiveRegion 1 27188
        C45E5:ChIPSeqTF 1 27188
        C45E5:TRF 1 27188
        C45E5:Dust 1 27188
        C45E5:inverted 1 27188
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_IV
    Overlap_right: F44E8 17589
    Overlap_left: H35B03
    Clone_left_end: F44E8 17589
      C45E5 1
    Clone_right_end: H35B03 21820
  DB_info: Database: EMBL NDB_AC FO080870
        NDB_ID _U61950
        NDB_SV FO080870.1
    Secondary_accession: U61950
    DB_remark: The 5' clone is H35B03, 2635 bp overlap; the 3' clone is F44E8, 9600 bp overlap. Actual start of this clone is at base position 1 of C45E5; actual end is at 485 of C31H1.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Le TT
    From_laboratory: RW
    Date: 12 Apr 1996 00:00:00
      19 Jun 1996 00:00:00
    Date_directory: 960410
    Species: Caenorhabditis elegans
  Visible: Clone: C45E5
    Remark: added 8000 bp to the 3' end 010911 db
  Properties: Genomic_canonical
    Checksum: MD5: a94ae79270ffec7fd7a3ef32f23c6839
    Status: Shotgun
      Finished
      Submitted: 12 Apr 1996 00:00:00
  Map: Sequence-IV
  Interpolated_map_position: IV 2.25925
  Method: Genomic_canonical