WormBase Tree Display for Sequence: C45E1

C45E1 DNA: C45E1 27111
  SMap: S_child: Gene_child: WBGene00195056 15783 14609
        WBGene00003654 6853 14623
        WBGene00219857 10033 10220
        WBGene00197503 4683 4771
        WBGene00199215 8213 8285
        WBGene00016663 22630 20038
        WBGene00197193 8285 8213
        WBGene00197996 21177 21086
      CDS_child: C45E1.1a 9370 14524
        C45E1.1a:wp154 9241 14524
        C45E1.1b 9370 14524
        C45E1.1b:wp154 9241 14524
        C45E1.1c 6985 14524
        C45E1.3:wp21 18172 18020
        C45E1.4 22627 20434
        C45E1.4:wp122 22627 15836
        C45E1.4:wp213 22627 18020
        C45E1.5 15674 14650
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g102n11_x7_I_p 9370 14521
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g68n11_x7_I_p 10974 10975
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g109_x7_I_m 21555 20437
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g32n11_x7_I_p 9370 14518
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g28n11_x7_I_m 22627 20437
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g111_x7_I_p 16512 16592
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g30n11_x6_I_p 7774 9404
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g23n11_x6_I_m 15329 15127
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g61_x6_I_m 14992 10651
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g48n11_x7_I_m 22627 20437
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g55n11_x7_I_p 9370 14521
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g108_x7_I_p 13868 16398
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g112_x7_I_m 24628 23966
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g48_x7_I_p 12573 14518
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g23n11_x7_I_m 22627 20437
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g92_x7_I_m 15674 15402
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g135_x7_I_m 10135 10013
        RNASEQ_embryo_him-8_20dC_post-L1_g43n11_x7_I_p 9370 14521
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g46n11_x7_I_p 11160 14521
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g47n11_x7_I_m 22627 20437
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g40n11_x7_I_p 9370 10975
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g120_x7_I_m 6882 5113
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g3n11_x7_I_m 16176 13563
        RNASEQ_L4_soma_JK1107_no_DNaseI_g40n11_x7_I_m 22627 20437
        RNASEQ_L4_soma_JK1107_no_DNaseI_g44n11_x7_I_p 9370 14521
        RNASEQ_L4_soma_JK1107_no_DNaseI_g69_x7_I_m 15674 14776
        RNASEQ_L4_soma_JK1107_no_DNaseI_g67n11_x7_I_m 15500 14779
        RNASEQ_L4_soma_JK1107_no_DNaseI_g97_x7_I_m 10548 10410
        RNASEQ_L4_soma_JK1107_no_DNaseI_g17n11_x7_I_p 829 6503
        RNASEQ_L4_soma_JK1107_no_DNaseI_g10n11_x7_I_m 16176 13563
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g58_x7_I_p 9370 14521
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g36n11_x7_I_m 22627 20437
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g96_x7_I_m 15674 14821
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g107_x7_I_m 10346 10130
        RNASEQ_early_embryo_g55n11s1k171_x7_I_p 11132 11234
        RNASEQ_early_embryo_g55n11_x7_I_p 9370 14521
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g90_x7_I_m 21555 20437
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g42n11s1k56_x7_I_p 11132 11234
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g42n11_x7_I_p 9370 14521
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g20n11_x7_I_m 22627 20437
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g32n11s1k77_x7_I_p 11132 11234
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g32n11_x7_I_p 9370 14521
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g109_x7_I_m 15455 14740
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g59n11_x7_I_p 9370 14521
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g45n11_x7_I_m 22627 20437
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g60s5k70_x7_I_p 13868 19356
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g97_x7_I_m 21555 20437
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g58n11_x7_I_p 9370 14521
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g100_x7_I_p 12924 14521
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g155_x7_I_m 22562 21626
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g120_x7_I_p 9493 12602
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g100_x6_I_m 18443 16991
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g66n11_x7_I_p 9370 12715
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g103n11_x7_I_m 22627 21532
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g133_x7_I_m 20538 20461
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g117n11_x7_I_p 12573 14521
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g93_x7_I_m 10548 10311
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g10n11_x7_I_p 6748 13244
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g137_x7_I_m 26884 26291
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g8n11_x7_I_p 829 3683
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g70_x7_I_p 18090 18544
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g194_x7_I_m 26274 24699
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g105n11_x7_I_p 12573 14521
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g58n11_x7_I_p 9370 12715
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g114_x7_I_m 21555 21451
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g63_x7_I_p 11297 20658
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g133n11_x7_I_m 15500 14779
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g47n11_x7_I_p 9370 14434
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g45n11_x7_I_m 22627 20437
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g136_x7_I_m 15674 15402
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g93_x7_I_p 18312 19315
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g32n11_x7_I_m 15313 13563
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g44n11_x7_I_p 9370 14518
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g113_x7_I_m 21555 20464
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g130_x7_I_m 15674 15408
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g76_x7_I_m 10548 3608
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g148_x7_I_m 26306 24767
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g59_x7_I_p 18090 18544
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g56n11_x7_I_p 10036 10182
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g100_x7_I_m 21555 20437
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g65n11_x7_I_p 9370 14521
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g67_x7t1_I_m 10548 3608
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g99_x7_I_m 26274 24732
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g4n11_x7t1_I_m 16176 13563
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g16n11_x7t1_I_p 829 6503
        C45E1.gc1 1208 462
        C45E1.gc2 9370 14524
        C45E1.gc3 17960 15723
        C45E1.gc4 22627 20434
        ContigI.elegans.jigsaw.417.mRNA417 9268 14613
        ContigI.elegans.jigsaw.419.mRNA419 22657 20037
        ContigI.elegans.jigsaw.418.mRNA418 15907 14612
        AG1201_C45E1.1.T1 6985 14524
        AG1201_C45E1.1.T3 6985 14524
        AG1201_C45E1.1.T2 12573 14524
        AG1201_C45E1.5.T2 15674 14650
        AG1201_C45E1.5.T1 15702 14650
        AG1201_RIT1M.764.T1 17204 17028
        AG1201_RIT1M.1177.T1 18533 18321
        AG1201_RIT1M.1177.T2 18533 18321
        AG1201_C45E1.4.T1 22627 20434
      Transcript (11)
      Nongenomic: yk384e7 12856 14533
      PCR_product: cenix:246-e4 15828 16155
        cenix:84-a4 12527 13686
        mv_C45E1.1 9242 14522
        mv_C45E1.3 15725 22626
        mv_C45E1.4 15725 22626
        sjj_C45E1.1 12486 14693
        sjj_C45E1.3 15223 17311
        sjj_C45E1.4 15223 17311
        smd_C45E1.4 15223 17311
      Allele (700)
      Oligo_set: Aff_C45E1.1 12951 14524
        Aff_C45E1.3 21468 15723
        Aff_C45E1.4 17145 15723
      Feature_object (227)
      Feature_data: C45E1:Polysome 1 27111
        C45E1:TranscriptionallyActiveRegion 1 27111
        C45E1:ChIPSeqTF 1 27111
        C45E1:TRF 1 27111
        C45E1:Dust 1 27111
        C45E1:inverted 1 27111
      Homol_data (19)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: K09H9 26912
    Overlap_left: M01B12
    Clone_left_end: C45E1 1
    Clone_right_end: M01B12 8448
  DB_info: Database: EMBL NDB_AC FO080867
        NDB_ID _AF043694
        NDB_SV FO080867.1
    Secondary_accession: AF043694
    DB_remark: The 5' clone is M01B12, 1300 bp overlap; the 3' clone is K09H9, 200 bp overlap. Actual start of this clone is at base position 1 of C45E1; actual end is at 17470 of K09H9.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Ledwith J
      Graves T
      Sutterer C
      Fronick B
    From_laboratory: RW
    Date: 06 May 1997 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: C45E1
  Properties: Genomic_canonical
    Checksum: MD5: 677219a39eb1f911ecb9ae4a91c41e0b
    Status: Finished
      Submitted: 06 May 1997 00:00:00
  Map: Sequence-I
  Interpolated_map_position: I -4.47682
  Method: Genomic_canonical