WormBase Tree Display for CDS: C43E11.9
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C43E11.9 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C43E11 | |||
Structure | Source_exons | 1 | 123 | |||
173 | 474 | |||||
521 | 638 | |||||
DB_info | Database | TrEMBL | UniProtAcc | P91154 | ||
UniProt | UniProtAcc | P91154 | ||||
UniProt_GCRP | UniProtAcc | P91154 | ||||
AlphaFold | entry | P91154 | ||||
NCBI_protein | GI_number | GI:351050559 | ||||
TREEFAM | TREEFAM_ID | TF300081 | ||||
Protein_id | CHROMOSOME_I | CCD65161 | 1 | |||
DB_remark | contains similarity to Pfam domains PF03657 (UPF0113 PUA domain), PF17833 (UPF0113 Pre-PUA domain); contains similarity to Interpro domains IPR036974 (PUA domain superfamily), IPR016686 (Ribosome biogenesis factor, NIP7), IPR015947 (PUA-like superfamily), IPR005155 (UPF0113, PUA domain), IPR002478 (PUA domain), IPR040598 (60S ribosome subunit biogenesis protein NIP7, pre-PUA domain) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00016607 | ||||
Corresponding_transcript | C43E11.9.1 | |||||
Corresponding_protein | CE08687 | |||||
Corresponding_PCR_product (3) | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (40) | ||||||
RNAi_result (11) | ||||||
Microarray_results (17) | ||||||
Brief_identification | 60S ribosome subunit biogenesis protein NIP7 homolog | Accession_evidence | UniProt | TR:P91154 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf014646 | |||||
Method | curated |