WormBase Tree Display for Sequence: C18A11

C18A11 DNA: C18A11 43450
  SMap: S_child: Gene_child (15)
      CDS_child: C18A11.1 36450 36991
        C18A11.2 34481 34816
        C18A11.3 27924 32387
        C18A11.3:wp153 25697 32387
        C18A11.3:wp203 27924 32387
        C18A11.4 12345 14209
        C18A11.5:wp98 8120 11202
        C18A11.5:wp109 8120 10852
        C18A11.5a:wp248 8120 9165
        C18A11.5b 8120 10477
        C18A11.5c 8120 11202
        C18A11.6:wp234 1610 164
        C18A11.6:wp261 1610 1434
        C18A11.7a 25005 17811
        C18A11.7b 19471 17811
        C18A11.8:wp14 19471 17811
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g40_x17_X_p 36450 36988
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g117_x17_X_p 8248 8334
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g16n11_x17_X_m 19471 17814
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g55n11_x17_X_p 34481 34813
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g20_x17_X_m 23135 19343
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g136_x17_X_m 24567 24496
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g102_x17_X_p 9216 9420
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g143_x17_X_p 9100 9214
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g68_x17_X_p 30401 32372
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g4_x17_X_p 36450 36988
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g8n11_x17_X_p 34806 34883
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g25n11_x17_X_m 19471 17814
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g12_x17_X_p 36450 36985
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g27n11_x17_X_p 34481 34813
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g6_x17_X_m 23135 19343
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g50n11_x17_X_p 27924 32384
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g5_x17_X_m 19471 17814
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g20_x17_X_p 36450 36940
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g23n11_x17_X_p 27924 32384
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g19n11_x17_X_m 19471 17814
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g14n11_x17_X_p 34806 34886
        RNASEQ_embryo_him-8_20dC_post-L1_g88_x17_X_p 32295 32351
        RNASEQ_embryo_him-8_20dC_post-L1_g127_x17_X_p 36797 36895
        RNASEQ_embryo_him-8_20dC_post-L1_g105_x17_X_p 28058 28147
        RNASEQ_embryo_him-8_20dC_post-L1_g55n11_x17_X_p 8120 10474
        RNASEQ_embryo_him-8_20dC_post-L1_g103_x17_X_m 24620 24502
        RNASEQ_embryo_him-8_20dC_post-L1_g1n11_x17_X_m 19471 17814
        RNASEQ_embryo_him-8_20dC_post-L1_g116_x17_X_m 23867 23787
        RNASEQ_embryo_him-8_20dC_post-L1_g77_x17_X_p 30401 30460
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g35n11_x17_X_p 34481 34813
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g153_x17_X_p 9053 9100
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g147_x17_X_p 13547 14176
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g180_x17_X_p 8451 8522
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g77_x17_X_p 12345 13260
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g7_x17_X_p 36450 36988
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g40n11_x17_X_p 27924 32384
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g127_x17_X_m 23135 23043
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g155_x17_X_m 24311 24123
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g4n11_x17_X_m 19471 17814
        RNASEQ_L4_soma_JK1107_no_DNaseI_g105_x17_X_p 12345 13480
        RNASEQ_L4_soma_JK1107_no_DNaseI_g2n11_x17t1_X_m 19471 17814
        RNASEQ_L4_soma_JK1107_no_DNaseI_g45n11_x17_X_p 34481 34813
        RNASEQ_L4_soma_JK1107_no_DNaseI_g31n11_x17_X_p 27924 32384
        RNASEQ_L4_soma_JK1107_no_DNaseI_g140_x17_X_p 13547 14137
        RNASEQ_L4_soma_JK1107_no_DNaseI_g61_x17_X_p 36450 36988
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g10n11_x17_X_p 34481 34813
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g119_x17_X_m 24677 24544
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g12_x17_X_m 23135 17814
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g55n11_x17_X_p 27924 32384
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g4_x17_X_p 36450 36988
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g8n11_x17_X_m 19471 19343
        RNASEQ_early_embryo_g62n11_x17_X_p 10888 11184
        RNASEQ_early_embryo_g58n11_x17_X_p 8120 10474
        RNASEQ_early_embryo_g56_x17_X_p 30401 32384
        RNASEQ_early_embryo_g7n11_x17t1_X_m 25005 19343
        RNASEQ_early_embryo_g2n11_x17t1_X_m 19471 17814
        RNASEQ_early_embryo_g58n11e6k190_x17_X_p 9348 9822
        RNASEQ_early_embryo_g93_x17_X_p 36791 36895
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g90_x17_X_p 36450 36988
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66n11_x17_X_p 27924 32384
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g96n11_x17_X_p 34481 34771
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g100_x17_X_p 8451 10462
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g1n11_x17t1_X_m 19471 17814
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g3_x17t1_X_m 24311 19343
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g23n11_x17_X_p 27924 32384
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g63_x17t1_X_p 36450 36988
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g5n11_x17t1_X_m 19471 17814
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g6_x17t1_X_m 24311 19343
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g29n11_x17_X_p 34806 34889
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g18n11_x17_X_p 27924 32384
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g19n11_x17_X_p 34806 34886
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g111_x17_X_m 24650 24493
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g57_x17_X_p 36450 36988
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g104_x17_X_m 24311 23088
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g1n11_x17t1_X_m 19471 17814
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g1_x17t1_X_m 19471 17814
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g120_x17_X_p 13342 14197
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g57_x17_X_p 36450 36988
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g107_x17_X_p 34806 34868
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g18n11_x17_X_p 27924 32384
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g2_x17t1_X_m 24311 19343
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g2_x17t1_X_m 19471 17814
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g105_x17_X_p 34601 34735
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g68_x17_X_p 36450 36988
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g15n11_x17_X_p 27924 32384
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g11n11_x17_X_m 19471 17814
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g13_x17_X_m 23135 19343
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g56_x17_X_p 36450 36988
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g60n11_x17_X_p 27924 32294
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g71n11_x17_X_p 8120 9411
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g74n11_x17_X_m 24677 24416
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g131_x17_X_p 34623 34796
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g109_x17_X_m 24311 24111
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g90_x17_X_m 25005 24147
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g88n11_x17_X_p 8120 8561
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g68n11_x17_X_p 27924 30403
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g119_x17_X_p 9174 9387
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g77n11_x17_X_m 24311 24144
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g120_x17_X_p 34631 34795
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g103_x17_X_p 12345 13266
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g7_x17_X_m 23135 19343
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g139_x17_X_p 9616 10267
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g6n11_x17_X_m 19471 17814
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g64_x17_X_p 36450 36949
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g12_x17_X_m 23135 17814
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g27n11_x17_X_p 27924 32384
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g9n11_x17_X_m 19471 19343
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g143_x17_X_p 34554 34721
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g37_x17_X_p 36450 36988
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g94_x17_X_m 24311 24255
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g125_x17_X_p 9077 9215
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g138_x17_X_p 8496 9049
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g163_x17_X_p 12345 13212
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g16_x17_X_m 23135 19343
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g168_x17_X_p 8314 8420
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g94_x17_X_p 30401 32384
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g114n11_x17_X_m 24677 24499
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g37_x17_X_p 36450 36988
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g169_x17_X_p 9670 9720
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g14n11_x17_X_m 19471 17814
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g144_x17_X_m 24311 24258
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g62n11_x17_X_p 34481 34810
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g1n11_x17t1_X_m 19471 17814
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g19n11_x17_X_p 27924 32384
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g78_x17_X_p 36450 36988
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g122_x17_X_p 9053 9100
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g93_x17_X_m 24311 24165
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g2_x17t1_X_m 23135 19343
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g137_x17_X_m 24659 24544
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g116_x17_X_p 34623 34742
        C18A11.gc1 3584 164
        C18A11.gc2 8120 10477
        C18A11.gc3 12345 14209
        C18A11.gc4 19471 17811
        C18A11.gc5 25005 21127
        C18A11.gc6 27924 32387
        C18A11.gc7 34481 34816
        C18A11.gc8 36450 36987
        ContigX.elegans.jigsaw.1268.mRNA1268 35657 37409
        ContigX.elegans.jigsaw.1267.mRNA1267 34424 34891
        ContigX.elegans.jigsaw.1264.mRNA1264 12313 14334
        ContigX.elegans.jigsaw.1263.mRNA1263 8013 11189
        ContigX.elegans.jigsaw.1265.mRNA1265 25043 17268
        ContigX.elegans.jigsaw.1266.mRNA1266 27824 32537
        AG1201_C18A11.6.T1 497 164
        AG1201_C18A11.5.T3 8120 8564
        AG1201_C18A11.5.T2 8120 10477
        AG1201_C18A11.5.T4 8120 11202
        AG1201_C18A11.5.T1 9174 10477
        AG1201_C18A11.4.T1 12345 14209
        AG1201_C18A11.7.T10 19471 17811
        AG1201_C18A11.7.T11 19471 17811
        AG1201_C18A11.7.T15 24311 17811
        AG1201_C18A11.7.T12 25005 17811
        AG1201_C18A11.7.T4 25005 19340
        AG1201_C18A11.7.T2 19471 19343
        AG1201_C18A11.7.T5 24311 19343
        AG1201_C18A11.7.T1 24677 24368
        AG1201_C18A11.3.T1 27924 32387
        AG1201_C18A11.2.T2 34481 34816
        AG1201_C18A11.2.T3 34481 34816
        AG1201_C18A11.2.T1 34589 34816
        AG1201_C18A11.1.T3 36450 36991
        AG1201_C18A11.1.T4 36454 36991
        AG1201_C18A11.1.T2 36791 36991
        AG1201_C18A11.1.T1 36812 36991
        AG1201_RIT6P.1827.T1 43137 43220
      Transcript (20)
      Genomic_non_canonical: WRM066cA10 7948 39045
        WRM0641dE11 8868 39417
      PCR_product (26)
      Allele (748)
      Oligo_set: Aff_C18A11.1 36448 36989
        Aff_C18A11.2 34479 34814
        Aff_C18A11.3 29643 32385
        Aff_C18A11.4 12344 14208
        Aff_C18A11.5 10216 11201
        Aff_C18A11.7 18409 17810
      Feature_object (324)
      Feature_data: C18A11:Polysome 1 43450
        C18A11:TranscriptionallyActiveRegion 1 43451
        C18A11:ChIPSeqTF 1 43450
        C18A11:TRF 1 43450
        C18A11:Dust 1 43450
        C18A11:inverted 1 43450
      Homol_data (16)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: C46F2 43252
    Overlap_left: C34D10
    Clone_left_end: C46F2 15981
      C18A11 1123
    Clone_right_end: C34D10 6159
      C18A11 43451
  DB_info: Database: EMBL NDB_AC FO080602
        NDB_ID _U39667
        NDB_SV FO080602.2
    Secondary_accession: U39667
    DB_remark: The 5' clone is C34D10, 1125 bp overlap; the 3' clone is C46F2, 200 bp overlap. Actual start of this clone is at base position 1122 of C18A11; actual end is at 43449 of C18A11.
      [121025] Sequence correction: SNP 0 bases @ 669
      [121025] Sequence correction WBsf267828 : Insertion C1 bases from @ 656
      [121025] Sequence correction WBsf267924 : Insertion C1 bases from @ 19860
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Latreille P
      Wilson RK
    From_laboratory: RW
    Date: 16 Aug 1995 00:00:00
    Species: Caenorhabditis elegans
  Visible: Clone: C18A11
    Reference: WBPaper00015325
  Properties: Genomic_canonical
    Checksum: MD5: 00e56bcba651689fe60bf70db8441cba
    Status: Finished
      Submitted: 16 Aug 1995 00:00:00
  Map: Sequence-X
  Interpolated_map_position: X -0.637889
  Method: Genomic_canonical