WormBase Tree Display for CDS: C15C7.1
expand all nodes | collapse all nodes | view schema
C15C7.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C15C7 | |||
Structure | Source_exons | 1 | 93 | |||
154 | 260 | |||||
314 | 408 | |||||
761 | 834 | |||||
DB_info | Database | SwissProt | UniProtAcc | P83528 | ||
UniProt | UniProtAcc | P83528 | ||||
UniProt_GCRP | UniProtAcc | P83528 | ||||
AlphaFold | entry | P83528 | ||||
NCBI_protein | GI_number | GI:373218959 | ||||
TREEFAM | TREEFAM_ID | TF313254 | ||||
Protein_id | CHROMOSOME_X | CCD64586 | 1 | |||
DB_remark | SYX-6 protein; contains similarity to Pfam domain PF05739 (SNARE domain); contains similarity to Interpro domain IPR000727 (Target SNARE coiled-coil homology domain) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00015789 | ||||
Corresponding_transcript | C15C7.1.1 | |||||
Corresponding_protein | CE30865 | |||||
Corresponding_PCR_product | cenix:31-e6 | |||||
mv_C15C7.1 | ||||||
Corresponding_oligo_set | GPL13394_WBGene00015789 | |||||
GPL13914_C15C7.1 | ||||||
GPL14144_C15C7.1_100-159_0.923_7_A | ||||||
GPL8304_CE_WBGene00015789_A | ||||||
GPL8304_CE_WBGene00015789_B | ||||||
GPL8673_C15C7_1P00036 | ||||||
GPL8673_C15C7_1P00186 | ||||||
GPL8673_C15C7_1P00263 | ||||||
Matching_cDNA (25) | ||||||
RNAi_result | WBRNAi00040594 | |||||
WBRNAi00110491 | ||||||
WBRNAi00110506 | ||||||
WBRNAi00110520 | ||||||
Microarray_results | GPL13394_WBGene00015789 | |||||
GPL13914_C15C7.1 | ||||||
GPL14144_C15C7.1_100-159_0.923_7_A | ||||||
GPL8304_CE_WBGene00015789_A | ||||||
GPL8304_CE_WBGene00015789_B | ||||||
GPL8673_C15C7_1P00036 | ||||||
GPL8673_C15C7_1P00186 | ||||||
GPL8673_C15C7_1P00263 | ||||||
Brief_identification | Putative syntaxin 6 | Accession_evidence | UniProt | SP:P83528 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 06 Jun 2002 00:00:00 | WBPerson1848 | ||||
Remark | [010330 db] added one internal exon based on EST data | Curator_confirmed | WBPerson1848 | |||
[20020606 db] split C17C7.7 off this based on EST data | Curator_confirmed | WBPerson1848 | ||||
Associated_feature | WBsf006093 | |||||
Method | curated |