WormBase Tree Display for CDS: C08A9.1
expand all nodes | collapse all nodes | view schema
| C08A9.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C08A9 | |||
| Structure | Source_exons | 1 | 53 | |||
| 468 | 640 | |||||
| 689 | 825 | |||||
| 986 | 1228 | |||||
| 1280 | 1330 | |||||
| DB_info | Database | KEGG | KEGG_id | 1.15.1.1 | ||
| SwissProt | UniProtAcc | P41977 | ||||
| UniProt | UniProtAcc | P41977 | ||||
| UniProt_GCRP | UniProtAcc | P41977 | ||||
| AlphaFold | entry | P41977 | ||||
| NCBI_protein | GI_number | GI:373218830 | ||||
| TREEFAM | TREEFAM_ID | TF105132 | ||||
| Protein_id | CHROMOSOME_X | CCD63614 | 1 | |||
| DB_remark | SOD-3 protein; contains similarity to Pfam domains PF00081 (Iron/manganese superoxide dismutases, alpha-hairpin domain), PF02777 (Iron/manganese superoxide dismutases, C-terminal domain); contains similarity to Interpro domains IPR019831 (Manganese/iron superoxide dismutase, N-terminal), IPR001189 (Manganese/iron superoxide dismutase), IPR036324 (Manganese/iron superoxide dismutase, N-terminal domain superfamily), IPR019832 (Manganese/iron superoxide dismutase, C-terminal), IPR036314 (Manganese/iron superoxide dismutase, C-terminal domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004932 | ||||
| Corresponding_transcript | C08A9.1.1 | |||||
| Corresponding_protein | CE08002 | |||||
| Corresponding_PCR_product | cenix:66-b2 | |||||
| mv_CAA54319 | ||||||
| sjj2_C08A9.1.1 | ||||||
| sjj_C08A9.1 | ||||||
| smd_C08A9.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (26) | ||||||
| RNAi_result (12) | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Superoxide dismutase [Mn] 2, mitochondrial | Accession_evidence | UniProt | SP:P41977 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
