WormBase Tree Display for CDS: C03G6.8
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| C03G6.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C03G6 | |||
| Structure | Source_exons | 1 | 9 | |||
| 59 | 236 | |||||
| 284 | 585 | |||||
| 635 | 699 | |||||
| 750 | 953 | |||||
| 998 | 1104 | |||||
| 1218 | 1474 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O01448 | ||
| UniProt | UniProtAcc | O01448 | ||||
| UniProt_GCRP | UniProtAcc | O01448 | ||||
| AlphaFold | entry | O01448 | ||||
| NCBI_protein | GI_number | GI:351020728 | ||||
| TREEFAM | TREEFAM_ID | TF322854 | ||||
| Protein_id | CHROMOSOME_V | CCD62705 | 1 | |||
| DB_remark | NHR-147 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00015395 | ||||
| Corresponding_transcript | C03G6.8.1 | |||||
| C03G6.8.2 | ||||||
| Corresponding_protein | CE45420 | |||||
| Corresponding_PCR_product | cenix:122-c11 | |||||
| cenix:50-f9 | ||||||
| mv_C03G6.4 | ||||||
| mv_C03G6.8 | ||||||
| sjj_C03G6.8 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | male_Nanopore_Roach_121196 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_18230 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_78608 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_36554 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_2561 | ||||||
| FN882062 | Inferred_automatically | transcript_builder.pl | ||||
| FN882061 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR180C9_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_274892 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_250267 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00039554 | |||||
| WBRNAi00107142 | ||||||
| WBRNAi00103164 | ||||||
| WBRNAi00107094 | ||||||
| WBRNAi00115834 | ||||||
| WBRNAi00010079 | ||||||
| WBRNAi00039555 | ||||||
| WBRNAi00028403 | ||||||
| WBRNAi00107511 | ||||||
| WBRNAi00107522 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nuclear Hormone Receptor family | Accession_evidence | UniProt | TR:O01448 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 28 Oct 2010 00:00:00 | WBPerson1849 | ||||
| Remark | [20101028 tb] added 5' exon based on est data. | Accession_evidence | FN882059 | Feature_evidence | ||
| Curator_confirmed | WBPerson1849 | |||||
| Method | curated |
