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WormBase Tree Display for CDS: Bm4107a

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Name Class

Bm4107aEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr2_contig_001
StructureSource_exons172
41314245
55615625
1052510597
2431724424
2525725371
2909829210
3689637004
3739837590
3978840021
4340643575
4470244942
4696447417
4765047797
4811948363
5044050613
5459754726
6394064017
6531065592
6707967277
6981569902
7056970708
7207272314
7385573960
7445174592
7543675618
7657876700
7694677089
7771577848
7797978126
7837278525
7873078887
7916279333
8032480571
8077280954
8127781456
8178081927
8242082655
DB_infoDB_remarkBMA-UNC-53 protein; contains similarity to Interpro domains IPR036872 (CH domain superfamily), IPR039041 (Nav/unc-53 family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003593 (AAA+ ATPase domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byexonerate
Prediction_statusPartially_confirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00224368
Corresponding_transcriptBm4107a.1
Corresponding_proteinBM48215
Matching_cDNAbrugia_GG6498|c0_g1_i1Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:00000785.14223From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
5.30163From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
5.76187From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
6.00569From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
6.22182From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
6.40922From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
7.24131From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:00000803.37511From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
6.08036From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
7.56474From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
9.38869From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:00000820.000382From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
5.22936From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
6.45089From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
6.69664From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
8.54788From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009213.5952From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
13.6078From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009413.1832From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
21.9585From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970.003639From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
0.005073From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
1.05937From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
12.769From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
2e-06From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
4.02277From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:000066210.7753From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
3.86537From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:00006635.57992From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed09 May 2019 16:45:02WBPerson4055
Remark[131112 pad] Renamed from Bm4107b as this is a single Isoform locus.Curator_confirmedWBPerson1983
[190509 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated