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WormBase Tree Display for CDS: Bm13789

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Name Class

Bm13789SMapS_parentSequenceBm_v4_Chr3_scaffold_001
StructureSource_exons142
296452
730928
10131157
14671593
17461960
21852344
24632587
29083006
DB_infoDatabaseTrEMBLUniProtAccA0A0I9N8J2
UniProtUniProtAccA0A0I9N8J2
AlphaFoldentryA0A0I9N8J2
UniProt_GCRPUniProtAccA0A0I9N8J2
Protein_idBm_v4_Chr3_scaffold_001CTP810121
DB_remarkBMA-UNC-101 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR011012 (Longin-like domain superfamily), IPR028565 (Mu homology domain), IPR001392 (Clathrin adaptor, mu subunit), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00234050
Corresponding_transcriptBm13789.1
Corresponding_proteinBM30970
Matching_cDNAbrugia_GG3478|c0_g2_i1Inferred_automaticallytranscript_builder.pl
brugia_GG3478|c0_g1_i1Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4095_4Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4095_1Inferred_automaticallytranscript_builder.pl
Brief_identificationClathrin coat assembly protein AP47, putativeAccession_evidenceTIGRBm1_56970
RNASeq_FPKMWBls:000007819.3018From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
21.0605From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
21.4658From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
23.9079From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
24.0233From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
27.8535From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
32.5811From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
WBls:000008027.7198From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
28.7407From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
43.2664From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
48.102From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:000008214.4652From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
16.186From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
17.6073From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
28.5626From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
28.6588From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009275.7614From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
78.3976From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009433.409From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
34.2256From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009720.3461From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
25.0101From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
25.7724From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
28.8463From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
38.3969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
38.7988From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
WBls:000066223.0759From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
25.4255From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066326.4243From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm13789c as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated