WormBase Tree Display for CDS: B0365.1
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B0365.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | B0365 | |||
Structure | Source_exons | 1 | 39 | |||
88 | 489 | |||||
534 | 1460 | |||||
1507 | 2763 | |||||
2809 | 3108 | |||||
3159 | 3533 | |||||
DB_info | Database | KEGG | KEGG_id | 2.3.3.8 | ||
TrEMBL | UniProtAcc | P90731 | ||||
UniProt | UniProtAcc | P90731 | ||||
UniProt_GCRP | UniProtAcc | P90731 | ||||
AlphaFold | entry | P90731 | ||||
NCBI_protein | GI_number | GI:3873757 | ||||
TREEFAM | TREEFAM_ID | TF300560 | ||||
Protein_id | CHROMOSOME_V | CAB02690 | 1 | |||
DB_remark | ACLY-2 protein; contains similarity to Pfam domains PF00285 (Citrate synthase, C-terminal domain), PF00549 (CoA-ligase), PF02629 (CoA binding domain), PF08442 (ATP-grasp domain), PF16114 (ATP citrate lyase citrate-binding); contains similarity to Interpro domains IPR036969 (Citrate synthase superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016143 (Citrate synthase-like, small alpha subdomain), IPR014608 (ATP-citrate synthase), IPR032263 (ATP-citrate synthase, citrate-binding domain), IPR005811 (ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain), IPR003781 (CoA-binding), IPR002020 (Citrate synthase), IPR016102 (Succinyl-CoA synthetase-like) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00007150 | ||||
Corresponding_transcript | B0365.1.1 | |||||
Corresponding_protein | CE07719 | |||||
Corresponding_PCR_product | cenix:36-b1 | |||||
mv_B0365.1 | ||||||
sjj_B0365.1 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA (62) | ||||||
RNAi_result | WBRNAi00062090 | |||||
WBRNAi00009730 | ||||||
WBRNAi00038982 | ||||||
WBRNAi00028107 | ||||||
Microarray_results (19) | ||||||
Brief_identification | ATP-citrate synthase | Accession_evidence | UniProt | TR:P90731 | ||
RNASeq_FPKM (74) | ||||||
Remark | [961205 dl] Prosite signature for succinyl_CoA ligases (PS00399) | Curator_confirmed | WBPerson1846 | |||
Associated_feature | WBsf019750 | |||||
Method | curated |