WormBase Schema for Model: Gene
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?Gene | Evidence | #Evidence | ||||||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Sequence | UNIQUE | ?Sequence | XREF | Gene_child | |
Identity | Version | UNIQUE | Int | |||||
Name | CGC_name | UNIQUE | ?Gene_name | XREF | CGC_name_for | #Evidence | ||
Sequence_name | UNIQUE | ?Gene_name | XREF | Sequence_name_for | ||||
Molecular_name | ?Gene_name | XREF | Molecular_name_for | |||||
Other_name | ?Gene_name | XREF | Other_name_for | #Evidence | ||||
Public_name | UNIQUE | ?Gene_name | XREF | Public_name_for | ||||
DB_info | Database | ?Database | ?Database_field | ?Text | ||||
Species | UNIQUE | ?Species | ||||||
History (6) | ||||||||
Status | UNIQUE | Live | #Evidence | |||||
Suppressed | #Evidence | |||||||
Dead | #Evidence | |||||||
Gene_info | Biotype | UNIQUE | ?SO_term | |||||
Gene_class | UNIQUE | ?Gene_class | XREF | Genes | ||||
Laboratory | ?Laboratory | |||||||
Cloned_by | #Evidence | |||||||
Reference_allele | ?Variation | #Evidence | ||||||
Allele | ?Variation | XREF | Gene | #Evidence | ||||
Possibly_affected_by | ?Variation | XREF | Possibly_affects | #Evidence | ||||
Legacy_information | Text | #Evidence | ||||||
Complementation_data | Text | |||||||
Strain | ?Strain | XREF | Gene | |||||
Component_of_genotype | ?Genotype | XREF | Gene | |||||
In_cluster | ?Gene_cluster | XREF | Contains_gene | |||||
RNASeq_FPKM | ?Life_stage | Float | #Evidence | |||||
GO_term | ?GO_term | XREF | Gene | ?GO_code | #Evidence | |||
GO_annotation | ?GO_annotation | XREF | Gene | |||||
Contained_in_operon | ?Operon | XREF | Contains_gene | |||||
Ortholog | ?Gene | XREF | Ortholog | ?Species | #Evidence | |||
Paralog | ?Gene | XREF | Paralog | ?Species | #Evidence | |||
Structured_description (11) | ||||||||
Disease_info | Experimental_model | ?DO_term | XREF | Gene_by_biology | ?Species | #Evidence | ||
Potential_model | ?DO_term | XREF | Gene_by_orthology | ?Species | #Evidence | |||
Disease_relevance | ?Text | ?Species | #Evidence | |||||
Modifies_disease | ?DO_term | XREF | Disease_modifier_gene | |||||
Models_disease_in_annotation | ?Disease_model_annotation | XREF | Disease_relevant_gene | |||||
Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_gene | |||||
Models_disease_asserted | ?Disease_model_annotation | XREF | Asserted_gene | |||||
Models_disease_inferred | ?Disease_model_annotation | XREF | Inferred_gene | |||||
Molecular_info | Corresponding_CDS | ?CDS | XREF | Gene | #Evidence | |||
Corresponding_CDS_history | ?CDS | XREF | Gene_history | |||||
Corresponding_transcript | ?Transcript | XREF | Gene | #Evidence | ||||
Corresponding_transcript_history | ?Transcript | XREF | Gene_history | |||||
Corresponding_pseudogene | ?Pseudogene | XREF | Gene | #Evidence | ||||
Corresponding_pseudogene_history | ?Pseudogene | XREF | Gene_history | |||||
Corresponding_transposon | ?Transposon | XREF | Gene | #Evidence | ||||
Other_sequence | ?Sequence | XREF | Gene | #Evidence | ||||
Associated_feature | ?Feature | XREF | Associated_with_gene | #Evidence | ||||
Associated_transcription_factor | ?Transcription_factor | XREF | Associated_with_gene | #Evidence | ||||
Gene_product_binds | ?Feature | XREF | Bound_by_product_of | |||||
Transcription_factor | ?Transcription_factor | XREF | Product_of | |||||
Experimental_info | RNAi_result | ?RNAi | XREF | Gene | #Evidence | |||
Expr_pattern | ?Expr_pattern | XREF | Gene | |||||
Drives_construct | ?Construct | XREF | Driven_by_gene | #Evidence | ||||
Construct_product | ?Construct | XREF | Gene | #Evidence | ||||
Regulate_expr_cluster | ?Expression_cluster | XREF | Regulated_by_gene | |||||
Antibody | ?Antibody | XREF | Gene | |||||
Microarray_results | ?Microarray_results | XREF | Gene | |||||
Expression_cluster | ?Expression_cluster | XREF | Gene | #Evidence | ||||
SAGE_tag | ?SAGE_tag | XREF | Gene | #SAGE_mapping_info | ||||
3d_data | ?3d_data | XREF | Gene | |||||
Interaction | ?Interaction | |||||||
Anatomy_function | ?Anatomy_function | XREF | Gene | |||||
Product_binds_matrix | ?Position_Matrix | XREF | Bound_by_gene_product | #Evidence | ||||
WBProcess | ?WBProcess | XREF | Gene | #Evidence | ||||
Map_info | Map | UNIQUE | ?Map | XREF | Gene | #Map_position | ||
Well_ordered | ||||||||
Hide_under | ?Gene | XREF | Representative_for | |||||
Representative_for | ?Gene | XREF | Hide_under | |||||
Positive | Inside_rearr | ?Rearrangement | XREF | Gene_inside | #Evidence | |||
Positive_clone | ?Clone | XREF | Positive_gene | #Evidence | ||||
Negative (2) | ||||||||
Mapping_data | 2_point | ?2_point_data | ||||||
Multi_point | ?Multi_pt_data | |||||||
Pos_neg_data | ?Pos_neg_data | |||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||
Landmark_gene | ||||||||
Pseudo_map_position | ||||||||
Reference | ?Paper | XREF | Gene | #Evidence | ||||
Picture | ?Picture | XREF | Gene | |||||
Remark | ?Text | #Evidence | ||||||
Method | UNIQUE | ?Method |