WormBase Tree Display for Variation: WBVar02156642

WBVar02156642 Name: Public_name: gk5812
    HGVSg: CHROMOSOME_I:g.7259389_7267062del
  Sequence_details: SMap: S_parent: Sequence: CHROMOSOME_I
    Flanking_sequences: AAAGATGATGGACAGGAGGAAGAAAATCGA GGGACGGATAATAGTTTGGCACACACAAGA
    Mapping_target: CHROMOSOME_I
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00051410
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00002348
      WBGene00200672
    Transcript: R06C7.10.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-6014
        Intron_number: 2-9/10
        Exon_number: 1-11/11
      R06C7.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: CRISPR_Cas9
  Remark: Variation accession generated for Mark Edgley for a set of gk CRISPR alleles.
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced.
  Method: Allele