WormBase Tree Display for Variation: WBVar02156511

WBVar02156511 Name: Public_name: gk5672
    HGVSg: CHROMOSOME_V:g.4721593_4724619del
  Sequence_details: SMap: S_parent: Sequence: F39G3
    Flanking_sequences: TCCAATAAATAACATTTGTACCGGCCATAA TTGGCTCTTTTATTAGGTGTTTGTACCAAG
    Mapping_target: CHROMOSOME_V
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00051283
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00018210
    Transcript: F39G3.5b.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
      F39G3.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-961
        Intron_number: 2-4/5
        Exon_number: 1-6/6
      F39G3.5b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/4
        Exon_number: 1-5/5
  Isolation: Mutagen: CRISPR_Cas9
  Remark: Variation accession generated for Mark Edgley for a set of gk CRISPR alleles.
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is perfect, but it was not sequenced.
  Method: Allele