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WormBase Tree Display for Variation: WBVar02156381

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Name Class

WBVar02156381NamePublic_namegk5482
HGVSgCHROMOSOME_III:g.13437086_13439553del
Sequence_detailsSMapS_parentSequenceF45G2
Flanking_sequencesTTTTAAACACGTTTTTATTCGAAACCTGATGCTGGAAATGGAAAATGACGAAAAAATATC
Mapping_targetCHROMOSOME_III
Type_of_mutationDeletion
SeqStatusPending_curation
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00051153
LaboratoryVC
PersonWBPerson427
KO_consortium_allele
StatusLive
AffectsGeneWBGene00009736
TranscriptF45G2.10.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
VEP_impactHIGH
cDNA_position?-553
Intron_number2-4/5
Exon_number1-6/6
IsolationMutagenCRISPR_Cas9
RemarkVariation accession generated for Mark Edgley for a set of gk CRISPR alleles.
Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is perfect, but it was not sequenced.
MethodAllele